MmuINT0102003 @ mm9
Intron Retention
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41639625-41641270:-
Coord C1 exon
chr8:41641130-41641270
Coord A exon
chr8:41639752-41641129
Coord C2 exon
chr8:41639625-41639751
Length
1378 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TCCTTCCTTCCTTCCTCCAGGTT
3' ss Score
12.62
Exon sequences
Seq C1 exon
GATTCAAGAAAGAACCTACTCTTTGTGGTCCAACCTGTGGAAGAATCGAGCTGACTACCTCAATCCTCTGTTTAGAGCTGACCACAGTCAGACCCAGGGGAGCCTTCATCTGCCTACAGCTCCATGCAACTTCACCTATAA
Seq A exon
GTAAGTCAGTCTTGCCAGATGTGGTTTGCAGCTGGTAATGACTTAACATTCAGAGGCCAAAGTATATGAAATAAGAGCTTCAAGGCTTTGCTGGACATAAAACCCACCAGGGAAGATGCGTGGCTATCTGATTTTGGCATTTCTGGCAGTGCTGTTTCTCTCTGCATTGCTTTACATGGGACATTCCCTTTAGAAATTGACACTTTACAATGAGGCCTTTAACACTACAAGTTCCCGTCAGCGTAATTGTTGGAAATGCAAGAAAGGAAATGGAGGAGGAAAGAAAATCAAGTCCTATTGAAGTAGAATTTGAAGCACAAGTTTGGTGTAAATATTTGCCTGTGGAAACCTTTGGTTTTAAGATGGTGCTGGGGTGCTCTTCACAGGTTCTAGGGAGGATACACTAAATGCCTAAAGCATGGTCTCCATTTGAGTCACTTCAGGCTTGTATTCAACAGTCTCACACACTGTGTGTTCTAGTACTAGTTCCCTCAGTATCATTTCTGACAGCACAGCAGAATATTAATCCTGTATCAGAAATGCCTGCATGCCTTGTACAAAACAGCACCTTTTAAGACTAAACAAGGCACACTGCAGTTATTTATATCATAGCTAATTCATTAATAGTGTTTCAAACTACTTTAGTGTGGCCCAGGCACTGTTCTACATGCTGTAGATAAATAAGATACCTCGCCCTCAAGGCACTTTTTAATAAGCCTGAAGATACCCCCAGCATGACAGCTTGTTCCATCTGCATTCCATAATGCTTTACTGTCTAGGATAGATTTATTGAAAATGCAAATGTCAATTTCTGTTGTTGTAATAAAGTCAAAGCTGTTTTAAGTTTAAAGGCCAGATTTTCTTTGCAGCAGGAGTTCTAAATATGTAATCACAAATCTTCAAGTTCCAATGATAAAATTTGCTGCTTCGGGTTTTGTTTTTTTGTTGTTGTTATTGTTGGGTTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCTTTCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAACGTTGGGATTAAAGGTGTGCACTACCACTGCCTGGCTTGTTGCTTCATTTCACTATAGAAAAACATATTATGTATGTTCTAACTTAGTAATAATATAAACTTACTCTTCCTAAGAGAAGTTAACTACCTTAGAAAAAATATCAACCTGAAATTATTACTTTTAGTAGTTGCTTTTTCAAGGCTGTAACTTGCTTTTGGTTATTAATATGTTGGGCTGTGATACTGAAGACAAGACTTGGGATTGTGGGCTTTCAGACTGGGATATGTGCTATCCTTCCTTCCTTCCTCCAG
Seq C2 exon
GTTTTGGAATGGGATGTATAACCGCTTTGAAAAGGGGTTGCAGCCTCGACAGTCTGTTACAGATTACCTCATGGCTGTGAAGGAGGAGTCCCAGCAGCTGGAGGAAGAACTGGAGTCCCTAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-Mtmr7:NM_001040699:12
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.349
Domain overlap (PFAM):
C1:
PF061568=DUF972=PU(1.2=2.1),PF093326=Mcm10=PU(8.0=22.9)
A:
NA
C2:
PF061568=DUF972=FE(51.9=100),PF093326=Mcm10=FE(30.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGAACCTACTCTTTGTGGTCC
R:
TCTTCTAGGGACTCCAGTTCTTCC
Band lengths:
262-1640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: