GgaINT0077030 @ galGal3
Intron Retention
Gene
ENSGALG00000013641 | MTMR7
Description
NA
Coordinates
chr4:64972258-64974377:+
Coord C1 exon
chr4:64972258-64972398
Coord A exon
chr4:64972399-64974250
Coord C2 exon
chr4:64974251-64974377
Length
1852 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
GATCTCCCCATCAATTTCAGATT
3' ss Score
8.79
Exon sequences
Seq C1 exon
AATCCAAGAACGAACATATTCACTGTGGGCTCATCTGTGGAAAAATCGTGCAGATTACCTGAATCCTTTGTACAGACCAGACCACAGGCAAATCTGGGGGACCCTGCACCCACAGATGGCTCCATGCAACTTCTTGTACAA
Seq A exon
GTAGGTAATATTCCTTGCCTTTGAGAATTGTCAAGGAACAGACTCCTTGCATATTTGCTGCATTCCGCTCTAGAGGTTTCTTCAACACTTTTTTTTTTTTCTTTTAAGATAGGAATATCCCAATAAGTTATCTCCAATAATTACTCCACATAACACACCCTGTGACTACAGTCACTAAAGCGTCTCAGTATTTAGAAGGAACTGGGGAGATCACATGCAGTCTGGTTATGAGAATTAGAGCTCAAGGGGCTCTCAGGCTGCTCGCTATTTATGGAGTAAGATGATTGGCTCATCATCGTAGCATTTAACAGGACAGCATTATCAGTTCTAAGCAAGGCTTTGGGCATAACAGCCAAGCCAAAGGAGGAGGCTAGGGAGCGAAGGGAGCACACCGTCAAAGAGTGTTAGTACAGAACATAATGCCTTCGTATTTATGATTCCATTAGAAAATGTATGGAGACTGAATTCAGGTTCAAATGCTGTGTCTCTTCCTTGCATGCTCGTAGTCAGCCAGCACCTCTGCAGCATTCCACAGCAGAGCATTAGTCTGAAAAGAAGCTTAAGATTAGAGCTATATTGATAGTTGCGTGTCCTAATTTTGTGGTTACTCACATCTTCCACTGAGAAGCAGCTGTTTCAGTTCTGTTATCATCAATGTTTTCTAAATTTAAATTTGTTTAAACTTCTTCCATTTGAGATTTTGCAATCATAATTTGATACAGTTTAATTGCTAACCTGAGCGTTCGGACAAAAACAAAAGGCAGACCGTCTCCATGTTGTCTTTATAGTTAAATATCAAGTAAAACCTGTTGTGTACACTAAGATTTTTTCAAAATTTAACAATACCTACTAAGTTTTGAAATGCTGGTATTGGCATCCTGGCTCAAGTAATTAATTGTTCAATTAATCTTAACATAAGGAGAACTTGATTAGAAATACACAGAAAACGTGACTTAAGCAAAACCAATTAGCTTGTTTTCTAATAGCAAGTAAAATCACTTGCTAAAATAACTGCCCTAGGTGACAGGAACTGTATTTTTTCATGTCTGCTGTCCCAGGTCATAGCCATTTTAAAACAGTTTAAAAATAGCCATTAATCTTATTCTTTGGTATAGTGAGATTTATAAAAGCAATACTGCTACTCCACTGGATGAATAATCCAGTTGATTTTAATTGAATTACTTGGTTGCGTGAGGATTTCCAAACATGAGCTATCAGATGATAACCTTAGGGAGGAATGTGACTTAAATAACGTACTCCTGGGATAGGAATGATAGCTTCTTGACTGGGCAGCTGCATCCAAGGGCAGCACTCTCAGCCTGTCTGGTGAACTACTTACACTTGCAAAGTCAAGTTCTGGCCATGTGCTCTGGGGAGAACAGAAGAGTGCTATAGCAAGCTACAGACTTGAGTTTGAGTTCTTTTCTCCTGAGGATGAAAAATAGCTCAATGCTCCAAAGTGCATACAATGTAAATAGAAGAAGAAAGTACCGTAGCAAAAGTTTGTGTTACTCTTGGAGGATACTTGTTTTTCTGATAAGCTGTGCCATTGTTTATCCATAATGACCTGAATTGCTGAAAGCCTGAATCAGTGAACCACCCAGAGCCGTGTGATCTAAGTCATTCACCTTTCTCTCTGTTGTGTATAAGAAGTGGTTCAAGCTCTGTCCACTGATTTGCATCTTCAGCATAGACCCAATGTAAATGAACCATAAACCTTACCAAATATTTAATGAATGTATGTATGTAATGTGTACACACTCCAATGACAGTTGGAAAAGCTGGAAAAACGTATGTAGTTAAGTCTTTTGAGGCCATCTCACAAAATTACTGATCTCCCCATCAATTTCAG
Seq C2 exon
ATTCTGGAGTGGTATGTACAACCGCTTTGAAAAAGGGCTGCATCCTCGACAGTCAGTCACTGATTATCTGATGGCAGTGAAGGAGGAGACTCAACAGCTGGAAGAAGAGCTGGCAGTCTTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641:ENSGALT00000022188:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACGAACATATTCACTGTGGGC
R:
CTCTCCTAAGACTGCCAGCTCT
Band lengths:
262-2114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]