MmuINT0102003 @ mm10
Intron Retention
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:40554271-40555916:-
Coord C1 exon
chr8:40555776-40555916
Coord A exon
chr8:40554398-40555775
Coord C2 exon
chr8:40554271-40554397
Length
1378 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TCCTTCCTTCCTTCCTCCAGGTT
3' ss Score
12.62
Exon sequences
Seq C1 exon
GATTCAAGAAAGAACCTACTCTTTGTGGTCCAACCTGTGGAAGAATCGAGCTGACTACCTCAATCCTCTGTTTAGAGCTGACCACAGTCAGACCCAGGGGAGCCTTCATCTGCCTACAGCTCCATGCAACTTCACCTATAA
Seq A exon
GTAAGTCAGTCTTGCCAGATGTGGTTTGCAGCTGGTAATGACTTAACATTCAGAGGCCAAAGTATATGAAATAAGAGCTTCAAGGCTTTGCTGGACATAAAACCCACCAGGGAAGATGCGTGGCTATCTGATTTTGGCATTTCTGGCAGTGCTGTTTCTCTCTGCATTGCTTTACATGGGACATTCCCTTTAGAAATTGACACTTTACAATGAGGCCTTTAACACTACAAGTTCCCGTCAGCGTAATTGTTGGAAATGCAAGAAAGGAAATGGAGGAGGAAAGAAAATCAAGTCCTATTGAAGTAGAATTTGAAGCACAAGTTTGGTGTAAATATTTGCCTGTGGAAACCTTTGGTTTTAAGATGGTGCTGGGGTGCTCTTCACAGGTTCTAGGGAGGATACACTAAATGCCTAAAGCATGGTCTCCATTTGAGTCACTTCAGGCTTGTATTCAACAGTCTCACACACTGTGTGTTCTAGTACTAGTTCCCTCAGTATCATTTCTGACAGCACAGCAGAATATTAATCCTGTATCAGAAATGCCTGCATGCCTTGTACAAAACAGCACCTTTTAAGACTAAACAAGGCACACTGCAGTTATTTATATCATAGCTAATTCATTAATAGTGTTTCAAACTACTTTAGTGTGGCCCAGGCACTGTTCTACATGCTGTAGATAAATAAGATACCTCGCCCTCAAGGCACTTTTTAATAAGCCTGAAGATACCCCCAGCATGACAGCTTGTTCCATCTGCATTCCATAATGCTTTACTGTCTAGGATAGATTTATTGAAAATGCAAATGTCAATTTCTGTTGTTGTAATAAAGTCAAAGCTGTTTTAAGTTTAAAGGCCAGATTTTCTTTGCAGCAGGAGTTCTAAATATGTAATCACAAATCTTCAAGTTCCAATGATAAAATTTGCTGCTTCGGGTTTTGTTTTTTTGTTGTTGTTATTGTTGGGTTTTGTTTGTTTGTTTGTTTGTTTTTGAGACAGGATTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGGCTTTCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAACGTTGGGATTAAAGGTGTGCACTACCACTGCCTGGCTTGTTGCTTCATTTCACTATAGAAAAACATATTATGTATGTTCTAACTTAGTAATAATATAAACTTACTCTTCCTAAGAGAAGTTAACTACCTTAGAAAAAATATCAACCTGAAATTATTACTTTTAGTAGTTGCTTTTTCAAGGCTGTAACTTGCTTTTGGTTATTAATATGTTGGGCTGTGATACTGAAGACAAGACTTGGGATTGTGGGCTTTCAGACTGGGATATGTGCTATCCTTCCTTCCTTCCTCCAG
Seq C2 exon
GTTTTGGAATGGGATGTATAACCGCTTTGAAAAGGGGTTGCAGCCTCGACAGTCTGTTACAGATTACCTCATGGCTGTGAAGGAGGAGTCCCAGCAGCTGGAGGAAGAACTGGAGTCCCTAGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431:ENSMUST00000048898:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.223
Domain overlap (PFAM):
C1:
PF093326=Mcm10=PU(8.0=22.9)
A:
NA
C2:
PF093326=Mcm10=FE(30.7=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGAACCTACTCTTTGTGGTCC
R:
TCTTCTAGGGACTCCAGTTCTTCC
Band lengths:
262-1640
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types