HsaINT0106306 @ hg38
Intron Retention
Gene
ENSG00000003987 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr8:17302154-17304519:-
Coord C1 exon
chr8:17304379-17304519
Coord A exon
chr8:17302281-17304378
Coord C2 exon
chr8:17302154-17302280
Length
2098 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
CGCTTTGCCATCCTTTCCAGGTT
3' ss Score
10.58
Exon sequences
Seq C1 exon
GATTCAAGAAAGAACATACTCATTATGGGCTCACCTGTGGAAGAATCGGGCCGACTACCTGAATCCTCTGTTTAGAGCTGATCACAGCCAGACTCAGGGAACCCTTCATCTCCCTACAACACCATGTAACTTCATGTACAA
Seq A exon
GTATGTAAATCCTTGGTAACTTTGTAGCCATGGTATGAACTTGGATTCTGGTACCGTTTAACATTCAGAGGTCAAAGTGTATGACACTGATCTTTGAGGCTTTTATTGGACACAAAAGACACCAGAGGGAGATGCTTGAATATCTGATCTGGTATTTTTGCCAGTGACTCCTCTGCCTCTTTATTCCTCCTAAATGTGGAATTTTCTTCAGGAGGTGATGTTTTATAATAATGATATCATAAAAAGGTTAAGTTCCAATTTATTTTTTTAAAAGCAAATGAAAGAGAATAATGCAAATGCCTTAAGTCAAATGTGGAATCACAAGTTTCAACAGTGATCATGACGTGTTAAGGTTGGAGCAAAAATAATTGTGGTTTTTGCCGTTATACAACAAAAAGGCAAAAACCGCAATTACTTTTGCACCAACGTAATAGGTTGCCTTTTTGTCTCCACTGAATTAAGTCCTACTGGAAGTACTTCCCTTGTGGAAATTACATTAAGATTGTATGTATTAGCCGAGGCGGGTGGATCACCCTAGGTCAGGAGTTCAAGACAAGCCTGGCCAACATGGGGAGACCCAGTCTCTACTGAAAATACAAAAATTAGCTGGGCATGGTGGTGAGCGCCTGTAATCCTAGCTACTCGGGAGGCTGAGACAGGAGAATCACTTGAACCAGGGAGGAGGAGGTTGCGGTGAGCCGAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAGATTGTATGTATGGGGAGAATGGGGAGAGCAGGGTGGCATCCTACAAGTTCTACTAGGTATGTGCTAGATACGTATGTTTTTTCCTTTGGCTTCCTTGTTAGGCTTGTATAATATGAAAAAACTCAAAGGTCAGCAACATCAAAAGACTCATGCAGAATAAACAGAAACCCCATCTCTTTCTTCCTACTCACTCCCGACACAGACTTGATGGCTTTTCTCCCTGTATAGATTTCGTTTCTCAAGGTTTTTTTTCTTAATTATTTCAATCTAATTATCTTCTCAGAATTTATAGCAGAATATTCTATCATACTAAACAAAAGCCTCCATAGTGCATGTAAGACAAGTTTTAAGAGCTGTTGAGATATGACCAGTTGGATTGCAACTAATTTATTATTAACAGCTAGTCAACACATATTTTATTGAGGATCAAACACTGTTCTGGGCACTGCAGATAAAACAATGACACCAAGTCCTTGCCCTCAAAGTACTTACTTATCTACATAAATAAAATAGTGGTTCTAAGGGTAACTCTGTGATAACACCATTTTTCTCATTTGCACTCCAGTTGCTTTTTTGTGTAGGATAAAAAGGGATTTATTGGTCAGGCGTGGTGGCTCCCGCCTATAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCATGACCAACCTGACCAACATGGTGAAACCCTGTCTCTACTAAAAAAAATATAAAATTAGGCATGGTGGTGCATGCCTGTAATCCCAGGTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAAGGAGCCGATATCACACCACTGCACTTCGGTTTGGGTGACAAGAGCGAAACTCTGCCATTAAAAAAAAAAGCGGGGGGGGGGGGGTTATTGCCAATGCAAATGTCAACTTTTAGTGGTCGTGATACAAAAGATAAAAGCTGCAAGTTTAAGATTCCCTTTGTAGCTGAAAGATTCTAAATATACAATTTCAAAGTTCAAAACTAAGAGCCATTTTCTTAAAAGGTAATGGTTACATGTACTATTTTAATTTTAGAAAAATGTATTCTGTGCTAATTCATATATACAGGCAGACTTTTCATAAACTTATTCTCCCCAAAAGGCATTTACTGACCCAAGAAAAAAAACATCAACATGAAATTATTACCTTAAGTAGTGGCTTTTTTGAGGCTGAAATTTGCATTTGGTTATTATTAAGACTGTGGTATCATAGATACCTTAGAAGACTTGAGGATGTGAATTTTCAGACTGTGATAAGGTGGTATCACGACGCTTTGCCATCCTTTCCAG
Seq C2 exon
GTTTTGGAGTGGAATGTATAACCGCTTTGAAAAGGGGATGCAGCCCCGACAGTCAGTTACAGATTACCTAATGGCAGTGAAGGAAGAAACTCAGCAGCTAGAGGAAGAACTAGAGGCCCTGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000003987:ENST00000180173:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.241
Domain overlap (PFAM):
C1:
PF093326=Mcm10=PU(7.9=22.9)
A:
NA
C2:
PF093326=Mcm10=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development