BtaINT0096145 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:19010141-19012519:+
Coord C1 exon
chr27:19010141-19010281
Coord A exon
chr27:19010282-19012392
Coord C2 exon
chr27:19012393-19012519
Length
2111 bp
Sequences
Splice sites
5' ss Seq
CAAGTACGT
5' ss Score
8.4
3' ss Seq
AGCTCTGCTGTCCTCTGCAGGTT
3' ss Score
10.98
Exon sequences
Seq C1 exon
AATTCAAGAAAGAACATACTCTTTATGGGCTCACCTGTGGAAAAATCGGGCCGACTACTTGAATCCTCTGTTTAGAGCTGATCACAGTCAGACCCGGGGAGTCCTTCATCTCCCCACAGCGCCGTGCAACTTCATGTACAA
Seq A exon
GTACGTAAACCTCTAGGACCTCACTGGGTATGGTTGTGCCTTAGATTCTGGCACTGTTTACCACCTGGAGGCTGAAGGGTATGTAACACTGAGCTCCAAGGCATTTTTGCCTGTCTCCTGTCCCCCTCTTTCCCCTCTAAATACGGAATTCTCTTTAGAAGTTGATGTTTTGTAGTAATGATATCCTAAGAATGTAAGTTTCACTTTTATTTAAAAGTGAGAGGAGGAGAGGGAAGAAGGACTGAATAAACCAAGTGCCTGAAGTTAAATGTGGAGCTGCAGGTTTAGTTAGTGGTCATGACACAGTTCACCTTCTTTTGCTGCTGAATCAAATGAAACTATTGCCCTGTGGAAATAAATTCAAGATTGTCTATACTGGGATGGGAGAGCCTGGTGGTATCCAACAGATGCTACTAGGTCTGTAGGCTCTCTTTTATCCTTGGGTTTTTCCCTCTGGACTTGTATAATACAGAAGGGCGACTCAGAGATCAGGAAAAAGACAAAATTACACAGAAATCACCAAGAAACCCATTCCTTCTCCCTCCCTACCTCAGTACACCCTTTAGTGGCTTTTCGTCTCTAGAGCTTTCATTCTCATTGGGTTGGCCAAGAGGTTCGTTCTGTATCAATAAACCCAAACAAACTTTTTTGGCCAACCCAATAATGACTTCAATCCAGTTATTTCCCCGGAATTCTATAGAATAATATTAATTCGGTCACACTGAAAAAAATGCCTCATGGTTTGTGTGAATTGGCAGTTTTGAGACCTGTTGAGATACATACCCTGCAGTCAACTCTACTGCAACTAATTTGTTAGCTCTAGCCACTCAACACGTACATTACTGAGGCTCAAGCACTGTTCTAGGCACTGTGGATAAATCAATGAATGACACCAAGTCCCTGCTCTCAAAGTACTTTTCTGAGTAAATCTATAGGTATCCTTATGATAATGCTATTTACAGGCATACTTCTGAAATAATATGGGTTTGGTTCCTGGCCACTGTGATAGTGAACACTGCAATAAACTGAGTCACAATTTTTTAGTTTCCTAGTGCATATAAATGGATATGAATATGAATAACATGAATAACAAGAATACTGAACCCACTCCAGTATTCTTGCCTGGAGAATCCCAGGGACAGCGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGTGTTGGACACGACTGAAGCGACTGAGCAGCAGCAGCAGTGCATATAAAAGTTCTATTCACACTACATTGTAGTCAGTTAAGTGTGCAATAGTATTATGTCTAAAAAACAATCTAACAATGTTAGATACCTTAATTTAAAAATACATTGTTAAAAAAAATGCTAAGCTTCAGTGAGTAGTACTAGTAGTAACATCAAAGATCACTGGTAACCATAAAAAAATGAAAAATCTTGAAATATTCTGAGAATTATCAAAATGTGATAGAGACACAAAGTGAGCAAATGCTGTTAGAAAAACTGTGCTGATAGACTTGCCACACAACTTCACTCTGTAAAAATGCAAACTATGCAAAGTGCAGTAAAACAAGGTATACCTGTATTTTTATTTGCATTCCAGTATGCTTTACTGTATAGGATAAAAAAGGCAGGATTTGTTGCAAATTAAGTAATCCTAGTGGCTGTCATTTAAAAAACTCAAATTTAAAAGATTCCTTTGTGGCTGAAAGATTCTAAATGGTGATATAAACACTAATTTTCCAAGTTGACTTTCCTAACTAAGTCATCTTAAGCCAAAAAAATAAAGAAAATGGTAACATGTACTACTACAATCTATTTCAGAAAAATATATTATGTGCTTTTTAATTCAGTACCATCTACTCAAGTAGATTCTTCATGAATTTACTCTCCCCAAAAGAAGTTGACTGATTCAAGAAAATGAAAACATTAACATGAAATTATTACCTTCAGTTCAGTTCAGTCGCTCAGTTGTGTCTGACTCTTTGCGACCCCATTAGCTTAGTGAGTGGCTTTTTTGACCCTGTACTTCGCATTTGGTTATTATTAGGACTATGGTTTCAAAGATACCTTGGAAGACTCAAGAAAGTGAATGTACAGACTGTGACACGGTTTCACGAAGCTCTGCTGTCCTCTGCAG
Seq C2 exon
GTTTTGGAATGGAATGTATAATCGCTTTGAGAAGGGACTGCAGCCTCGACAATCAGTCACAGATTACCTCATGGCCGTGAAGGAGGAGACTCAGCAGCTGGAGGAAGAACTTGAGGCCCTGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372:ENSBTAT00000055365:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.302
Domain overlap (PFAM):
C1:
PF093326=Mcm10=PU(7.9=22.9)
A:
NA
C2:
PF093326=Mcm10=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]