RnoINT0096362 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:843351-844984:+
Coord C1 exon
chr10:843351-843557
Coord A exon
chr10:843558-844879
Coord C2 exon
chr10:844880-844984
Length
1322 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTACTGTCCCCATCCCCAGAAT
3' ss Score
9.47
Exon sequences
Seq C1 exon
GCCAAGGCAAACCTGGATAAAAGCAAGCAGACGCTGGAGAAGGAGAACGCAGACCTGGCTGGGGAGCTGCGTGTCCTGGGCCAGGCAAAGCAGGAGGTAGAGCACAAGAAGAAGAAGCTGGAGGGGCAGCTGCAGGAGCTGCAGTCCAAGTGCAGTGATGGGGAGCGTGCCCGGACTGAGCTCAGTGACAAGGTCCACAAACTACAG
Seq A exon
GTGAGGGCACCATAACTAGGATGCTGTTCCAGTGCAACAGACCTCTTGCTCAGCCTCCCAAAAGCTGGCTCATGCTTCTTCTTGTCAAAACCTCTTGCATATACTTAATGAACACATATTGAGCACCTACTGCATACCAGACACGGCGCTTAATCCTTAGACAAAAAATGCAAGAAAGAATATAGATTGTCTCTGTCCCATCTGCACTCCAGCCTGGTGAGGTAGGAGAGAGGGTCACAAACGCAGAGAGGAAATCTGAAGGAGACACACATCGCACTACTATAAAGACAAATATAAGGTGACCTGGAGTACAGTGGTGGGACAGGGTCAGGAAAGGTTGCCCTGAGGAGGTCTAACGTCAGATGCATATTTATGCAGAAGGTATAGTACATGCATGGTAAATGGGAAAAGTAGAAATAGTCAAGGGCCAGCAGTGCTGACAGGATGGGAGAAGAAATGGTATAGAATAGGACAAGAGAGGGAAGCTGTGGCCAGATTACAAAGGGCCTGATACCCCAATTAGATGTATGTTGATATTTACTCCCAAGTAACAGAGGCAACTGAAGCAGATGAATGATAGAGTCTGATTATCTTTGGTTTTAGCTTCAGATACACACTTAGCCTGAGTTTCCAGTCCCAAAGAATGGTCCCAGGTTTGATGAATATTTCTTGTGCTCCCAAGCTAGAACAAGGGAGCAGGGAATACTGCAGTTGTCATTACCTGCAGTTGAGAATAGGGGTTTGCTACTCTAATATCCAGTGACACTTAAGGCCTCATTATAAATGAGATCAGTAAGATGGGGGCTGCAGCCACACATCCTAGACCTGGGCAGAACCACCAGCGCTAGTGTCAGATGCAGAGATGCAGGAAGGTGCTGTGTTCTGTGCCTTTAGCTTCCACATCTTGGGGGATGGCCATGAGAGTTGTGAAAAGGCAGGGAACTGGACATGCCTATAGTCATGGGCCATTCTGTTTCTTCTGCAATGGTAAGAACTGACTTTCAGTACTGGAACTCTCAGATCTGCAGCTCATCTCTGCCAACCTTGGGAGATTTGGGATCCAATAAGGTGGATCCTAACTGCACCCAGTCAATACAGTGGAAGGTTCTAGAGCAGAGTATAGGGCCAGTGGACCCAGCTTACAGATGATGGGTTCCTGAAGTATCCACAGTTGCCCTTTGCCTCCTGTGTATTTTCTGTCACTGGGTACCACAGGTCCTATCCCACAAAGGTGCATGATATATTCTGAGTAAAAAGGACTCCTCTTACTGATCTGTGATATGAGTTTTATCTCACTGGTCTCTTACTGTCCCCATCCCCAG
Seq C2 exon
AATGAAGTGGAGAGTGTCACAGGCATGCTCAATGAGGCAGAAGGCAAGGCCATTAAACTGGCCAAGGAAGTGGCTTCCCTTGGATCTCAACTTCAGGACACCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.457
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.9=100),PF045827=Reo_sigmaC=FE(48.9=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.0=100),PF045827=Reo_sigmaC=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAACCTGGATAAAAGCAAGC
R:
GGGTGTCCTGAAGTTGAGATCC
Band lengths:
305-1627
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]