RnoINT0096536 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33641856-33642265:-
Coord C1 exon
chr15:33642139-33642265
Coord A exon
chr15:33641975-33642138
Coord C2 exon
chr15:33641856-33641974
Length
164 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTACCTTGATGCCTCCCCAGGGG
3' ss Score
6.18
Exon sequences
Seq C1 exon
GCTAACCTGGAGAAGATGTGCCGGACCCTGGAGGACCAGATGAATGAACACCGGAGCAAGGCTGAGGAGACACAGCGTTCTGTCAATGACCTCACCAGCCAGCGGGCCAAGCTGCAGACAGAGAATG
Seq A exon
GTGAGTCCAGGGCTGGAGCTCCGTGACCCCCAACCTCCTGAGCATCCTGGCCTTGGGCGTACACGCTGCTCACGTGCCCGCAGCCTCTCCAGAGAAGGGAGCCTAAGGATTAGGGGCTGGGTTGAGGGTGAAGAGGGGCTGAAGGTACCTTGATGCCTCCCCAG
Seq C2 exon
GGGAGCTGTCCAGACAGCTGGATGAGAAGGAGGCTCTTATCTCTCAGCTGACCCGAGGCAAGCTCACGTATACCCAGCAGCTGGAGGACCTCAAGAGGCAGCTGGAGGAGGAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.860 A=NA C2=0.325
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(14.8=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(4.9=34.9)
A:
NA
C2:
PF0003816=Filament=PD(4.6=32.5),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAACCTGGAGAAGATGTGCC
R:
CTTGACCTCCTCCTCCAGCTG
Band lengths:
246-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]