RnoINT0097199 @ rn6
Intron Retention
Gene
ENSRNOG00000030022 | Myo3b
Description
myosin IIIB [Source:RGD Symbol;Acc:1560313]
Coordinates
chr3:56529008-56530001:+
Coord C1 exon
chr3:56529008-56529155
Coord A exon
chr3:56529156-56529847
Coord C2 exon
chr3:56529848-56530001
Length
692 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
TCATGGTCTGTTTCCTCCAGATG
3' ss Score
9.93
Exon sequences
Seq C1 exon
TAGTGCAGAGGACAGGATGAATGTGGGCATCCTGGACATTTTTGGCTTTGAGGATTTCCAGAGGAATTCCTTTGAACAGCTCTGCATAAATATCGCCAACGAACAGGTCCAGTTCTACTTCAATCAGCACGTGTTCGCTCTTGAGCAG
Seq A exon
GTAGTGGTTGAAGCTAAAGCAGTGGGGCAGGGTGGATCAGGAGAGAGCCAGGCTGTGCACAGTTTGAAGCAAAAACCTGGTTAGTCAGGCTGTCGGGTAGACGGCTACAGAAAACCCACCTGGCAAGATAATCCTGTCAAAACAAACAGTCTAAAATTAGTCGGAGGGAAAAAAATGGTCCTGATTTCTATGGAAAGGTGTATTCCCTCGCTTGTGTGGAGCTGACGACAGTCCAGTTATTTAATTCTTACTTCAAAATTCTTCCACATATATTGTTGCGTATGCTTCATTCTCTCCTGTTCTGATGACAAATATCTATAATGGTGTCCAAAAAGACACAAGGTGACCCTGAGCACAAGATGGGGGTTCTTAGAACCCATATTCACCCTCTTCATCTCCCATTGTCTCTGCGTCTGATCCCCAGTAACGGAGGGGTGTCTCCTGGGAGGAGGAGCGGATATCCTTGAATCCCTAGTCATGGAAATGTACTCCCCAAGCAGTTCAACGGTAAATCTCACAGTCTGCGTGCACAGCATGAAGGCTGGGACGCACGGATTCTTCTGCTATATGTCTCTAACACACCTAGTCACTCGCATGTCTCAGTGTGGCCAGACCCAGAAAGTCGAAGCTAAAATGCCCTGGTGGATCTGAGGTCAGTTTCAGGCCAGAGAGTCATGGTCTGTTTCCTCCAG
Seq C2 exon
ATGGAGTATAAAAAGGAAGGCGTCGATGCTGTCCTCGTGCAGTACGAAGACAATCGCCCACTCCTGGACATGTTCCTGCAAAAACCCTTGGGCCTTCTAGCACTTTTGGATGAGGAAAGTCGATTTCCCCAAGGAACAGACCAGACTTTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030022:ENSRNOT00000037188:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAGAGGACAGGATGAATG
R:
AGTCTGGTCTGTTCCTTGGGG
Band lengths:
294-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]