BtaINT0098130 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003626 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:26050340-26051904:-
Coord C1 exon
chr2:26051757-26051904
Coord A exon
chr2:26050494-26051756
Coord C2 exon
chr2:26050340-26050493
Length
1263 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CACGATCCATTTCCTTCCAGATG
3' ss Score
9.5
Exon sequences
Seq C1 exon
TACTGCAGACGATGGTATGAATGTGGGGATCTTGGACATTTTTGGATTCGAAAACTTTCAGAGAAATTCATTTGAGCAGCTCTGCATAAACATCGCCAATGAGCAAATTCAGTACTATTTCAATCAGCATGTTTTTGCTCTCGAGCAG
Seq A exon
GTAACAGTGAACTCTGAAGGCCCTGGACCTGGTGGGGAACGTGCCTGCAGGCTGCCCAGAGTTTGAAGCAGAAACCTTGTTAGTGAGGTTAACAGGTCAAAGACTCCAAAGAAAAACCACTGATGAGGCAGTCCTGTCAAAATAACTCGACAATCTAAATGTAGTTTGATAAAAAGAGGTCTTGATTTCTGTGGAAAGGTACATTTCCTCCCTTGAGTGAAGCTGATGACAAGCCAATTATTTAAATGCTGTTTCCAAACTGATTCATATGCATTGCCCAAAATGCTGCATTCTGTTCTGCTTTATTTAACTAAAAATATTTGTGATCATGTCCCAAATGATACCGGATGATCTGGAACTCAGGATAAGGTTCTTGGTTTCCAACTCTCTCACTGACCATATGAATCCCCTGTCTCCTGCATATTAGACCCCACCAGAAGTGGATTGGTATCTTCAGCGAGGAGTAAGATACGTTCTTGGTTTTCTCAACATGGAAATCTTCACCCCCCCCCCCCATGAGTCTAATGGCAAATAAAACAGGATGTAAAGCTAGTGGACCCAAGGTCTGGGGCCCTTATCCTCCACCTTGACCTGAACCCAACCCCAAGACTCTCCTGTATGAAGAGAGAGTATATAGTTGTAAAAACTAAACATTCTGACCAAACTCCTTGTTTTAATGCAAGAGCAAGGAACCCATTAAACTGCTAGGTTAGATAAAGACAAAGTCATGGACTAAAAACACCGATATTGGTTTTATCATGGAAACTGGACAAATCCACAATGCACTCCTCCCCCACCCATCTTGTACAAAACAGACCTTGTTTCAATCCAGTTTACTTCCATTTATTTTCCCAGGAAATCTGGAGTTCTTTTTAGTTTTTTTTTTTAGTTCAAGATGATTCCTTTGCAGAAGACAGAAATCTGCTTTCCTCCTGGTTTCAACCAAACTTGTCACCAGAATAAAAAATTTTCAGCTTCCCTTCCTTTCTACATCAGCTTCTCAATTTAAGTTACCAAGTACATGTCTGAGAGACAGAGAGAGACAGAGAGCCAAGGTTCTGTTGCCAACCTTACCACCTGCCATAGGCTCCCTATAGGTCAGTCTTAAATCCTGAGCTTCAACAGTGCTGGATGCAGAAAAGCCTTGTCCTACTCACATAAAACAGACCCTGTTCAGTGTTGCCAGACAGAGAAAGTGCATGCAGCCTGGTGGTACCTAGGCCAGTACTGGGCTGGAGTGATTCACGATCCATTTCCTTCCAG
Seq C2 exon
ATGGAGTATCAGAACGAGGGCATTGACGCTACCCCCGTGGAGTACGAGGACAATCGCCCCCTCCTGGATATGTTCCTCCAGAAACCCCTGGGACTGCTTGCGCTTCTGGATGAGGAAAGCCGGTTTCCTCAGGCAACGGACCAGACCCTAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003626:ENSBTAT00000061222:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGCAGACGATGGTATGAATGTG
R:
CAACTAGGGTCTGGTCCGTTG
Band lengths:
302-1565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]