MmuINT0104368 @ mm9
Intron Retention
Gene
ENSMUSG00000042064 | Myo3b
Description
myosin IIIB [Source:MGI Symbol;Acc:MGI:2448580]
Coordinates
chr2:70092450-70093457:+
Coord C1 exon
chr2:70092450-70092597
Coord A exon
chr2:70092598-70093303
Coord C2 exon
chr2:70093304-70093457
Length
706 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
CCCGGTCCGTTTCCCTCCAGATG
3' ss Score
11.45
Exon sequences
Seq C1 exon
TAGTGCAGAGGACAGGATGAATGTGGGCATCTTGGACATTTTTGGCTTTGAGGATTTCCAGAGGAATTCCTTTGAACAGCTCTGCATAAATATTGCCAATGAACAGATCCAGTACTACTTCAATCAGCATGTGTTTGCTCTTGAGCAG
Seq A exon
GTAATGGTTGACTCTGAAGCTAAAGCAATGGGGGGGGGGGGGTAGGGGGCGGGAAAGACTGCCAGGCTGCCCACAATTTGAAGCAAAAACCTGGTTAGTCAGTCTGTTAAGTAAAAGGCTACAGAAAACCACTGGCAAAATAGTCCTGTCAAAATGAACAGTCAAAATTTAGTCTGAGAGGGGGAAAAAAAAAAAGGTCCTGATTTCTCTGGAAAGGTATTTTCCCTCGCTTGCATGGAGCTGGTGACAGGCCAATTATTTAATCCTTGATTCAAAATTCTTCCATGTATATTGTTGAGTATGTTTCATTCTCTCCTATTTTGACTACAAAAATAATGGTGTCCAAAATGATACAAGGTGACCCTGAGCCCATACAGGGGTTCTTAGAAGCCATATTCACCTTCATCAACTCCCATTGTCTCTGCATCTGATCCCCAGTAATGGAGGGGTGTCTCCTGGAAGGAAGAACAGATATTCTTGAATCCCCAGACATGGAAATCTACTCCCCATGCAGTTCAATGGTAAATTTGACAGTCTGAGTGCACAGAATTAAGGCTGTGATGCATAGATTCTTCTGCTATATGGCCCAAACACACCCAGTCACTCACATGTCTCAATATGGCCAGACCCAGGAAGTCCAGGCTAAAATGCCCAGTGGTACTGAGGCCAGTTTCAGGCCAGAGGGTCCCGGTCCGTTTCCCTCCAG
Seq C2 exon
ATGGAGTACAAGAATGAAGGTGTCGATGCTGTCCTCGTGCAGTATGAAGACAATCGCCCACTCCTGGACATGTTCCTCCAAAAACCCTTGGGCCTTCTGGCACTTCTGGATGAAGAAAGTCGATTTCCCCAAGGGACAGACCAGACCTTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042064-Myo3b:NM_177376:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGACAGGATGAATGTGG
R:
CCAAGGTCTGGTCTGTCCCTT
Band lengths:
295-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: