HsaINT0108725 @ hg38
Intron Retention
Gene
ENSG00000071909 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr2:170402848-170404400:+
Coord C1 exon
chr2:170402848-170402995
Coord A exon
chr2:170402996-170404246
Coord C2 exon
chr2:170404247-170404400
Length
1251 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CACAATCCATTTCCCTCCAGATG
3' ss Score
9.42
Exon sequences
Seq C1 exon
TAGTGCAGGAGGTGGAATGAATGTGGGGATCTTGGATATCTTTGGATTCGAGAATTTTCAGAGAAATTCATTTGAGCAGCTCTGCATAAACATCGCCAATGAGCAAATCCAGTACTATTTCAATCAGCATGTTTTTGCTCTTGAGCAG
Seq A exon
GTAATAGTGAACTCTGAGGTAACTAAACTTGATGGGGAAAAGGTGTCTCCAAGCTGCCCACAATTTGTAGCAGAAACCCTGTAGACTAACAACTAAAAGACCCTAGAGAGAAAATAGGGTAAGGCAGTCCTGGCTAAATAGTCTAAATTTGTCTGGAAAAGGTCTCGATTTCTGTGGAAAGGTACATTTCCTCACTTGAGTGGAGCTGGTGACAAGTCACTCATTTAAATTTTGTGTCAAAACTCTTTCGTGCATATTGCTCAAAATACTGTATCTCTTCTACTTTATTTAACTAAAAATATTTATGATTGCGTTCAAAATGACACAGATGACCTTGAATTCGGGACATAGGTTCTTAACTGCTACACTAGCCCTCCCTATCCCCTATCTGCTATATACCAGATCCCACAGTCACTGGAGAGGTATCTCCAGGGAAGAGTAAGATGTGTTCTTGGTTTTCTAGAAATGGAAATCATCCCTCTATGAGTTTAATAATAAATAAGACAGAGTAAGAAACTAGTGGACCCAAGGGATGGGGCTCTTTTCCTGTGGCAGCAGCCTATATAGCAGTCTGATCAACCCCAACCTTTACTTAAACCTTAAGACTCTCTTCTGTATGAAGTAGTTGCAATAATGAAACATTCTGGCTAAGCCTCTTCGATGCAGGGATAATTGTTTTAATGCAGGCATGAGGACGCACAAACTCAACTTCGATGAGATAGACACAAAGACATTTAGTGAAAATACCAGCATTGCTTTTATCTCTGGAGCTGGATAAATCTGTATAGCACTCCTCTCCCATCCACTCTTGTTTCAGTCCAGGTTCCTTCCATTTATTTCCCGGTAATCTGGAGTTTTTCTAGTTTTCCAACCCTAGATGATTCCTTTGTCGAACTCCTTGCAGAAGAGAAGTCTGTTTTCTTGGTTTAAACAATATTTCTCACCAAAATAAATTTTTTTTTTCAGCTTCACTTCCTTGTACATTAGTTTCTAAATGATAAGTTACCAAGTCCACATTTGAGAGAGATGTTTTACTGGTTTAGCTGCTGCCATAGGCCACTTGTAAGTCAGATTTAAGTGCACAGCTTTAATGGTGTTATATGCAGAAGATTCCTTTATTATACACATAAAACATATCCTGCTTTCCACATGCATTCAATGTTGCTAGACCCAGAAAGTCCATGTCAAAGTATCCTGGTGGTCCCAAGGCTAGTTTTGGGCTGGAGAGAATCACAATCCATTTCCCTCCAG
Seq C2 exon
ATGGAATATCAGAATGAAGGCATTGATGCTGTACCCGTGGAATATGAGGACAACCGCCCGCTCTTGGACATGTTCCTCCAGAAACCCCTGGGACTGCTTGCACTTTTGGATGAGGAAAGTCGGTTTCCCCAAGCAACTGACCAGACCCTGGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071909:ENST00000409044:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGGAGGTGGAATGAATGT
R:
CAGGGTCTGGTCAGTTGCTTG
Band lengths:
296-1547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development