GgaINT0045790 @ galGal4
Intron Retention
Gene
ENSGALG00000009602 | MYO3B
Description
myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
Coordinates
chr7:17862338-17862871:-
Coord C1 exon
chr7:17862724-17862871
Coord A exon
chr7:17862492-17862723
Coord C2 exon
chr7:17862338-17862491
Length
232 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AAACTTTGTTGACTTTGTAGATG
3' ss Score
5.79
Exon sequences
Seq C1 exon
CAATACTGAAAATGGAATGAATGTTGGTATACTAGATATATTTGGATTCGAGAACTTCGCAAGAAATTCCTTTGAACAGCTGTGCATAAATATTGCTAATGAGCAGATCCAGTTTTATTTCAATCAACATATTTTTGCACTTGAACAG
Seq A exon
GTAAATTTGGCTCTTGTGAAGTCTAGTTGAATCAGCCATCTTGACCCATAGATTATACTTAGGAATATATTATAAACTATAAAATGGTTGTGGGATTTATATGTAAGTAATGTTCGCATCTTTCAGCATAGTTGCTGCTGTTTTGTACATAATGTTGTTGGGGCCTACAGAGTATTTTTGTGCATTATAAATGTCCTAATGGTTCAATATTAAAACTTTGTTGACTTTGTAG
Seq C2 exon
ATGGAATATCAAAACGAGGGAATTGATGCTGCTACAGTGGAGTATGAGGACAACCGTCCACTTCTAGATATGTTCCTACAGAAACCCATGGGTCTCCTTTCTCTACTAGATGAAGAAAGTCGATTTCCTCAGGCAACAGACCTAACGTTAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009602:ENSGALT00000015648:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAAATGGAATGAATGTTGGT
R:
ACGTTAGGTCTGTTGCCTGAG
Band lengths:
292-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]