RnoINT0097280 @ rn6
Intron Retention
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70711696-70713792:+
Coord C1 exon
chr18:70711696-70711847
Coord A exon
chr18:70711848-70713702
Coord C2 exon
chr18:70713703-70713792
Length
1855 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GTATGCTTTTCTTTTCACAGAAG
3' ss Score
8.81
Exon sequences
Seq C1 exon
ACCTGAAGCCCCAGATGCTGTCGGGCACCGTGCCCTGTCTGCCTGCATACATACTCTACATGTGCATCAGGCACGCGGACTACACCAACGATGACCTCAAGGTGCACTCGTTGCTGAGCTCCACCATCAATGGCATTAAGAAAGTCCTCAAG
Seq A exon
GTAAGCAAGGAGCCCCCCAGTAGCGGTAGCAAAGCTAGCACCTCCATTGCCTCTCTGTGTCTGTGTTCTAGCGGTTACCCAAGATGCCTAGCAGTTCTCCGAGCAGAGTGAGGTCTGAAAATGTCAGGAAGCACAGAACTCCATGTGGGCCTGCAGCTCCCTGCTGAGCCTGTGTGTCTGGGAAGCCTGACTGACCACTAGGATAGATGTTATCGAGGTGCGCTACTTCTGAACCAAACTTAGGACCCCATACTCTCTCACCATCCCAAGGGTCTGAGGCACACGATCCTAGTTGGTGGCACAGCAGAGCTGCTGCCATTCATAGGTTTCCAAGGTGAGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGAACTAACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGAATCTGATGCCCTCTTCTGGTGTGTCTGAGGACAATGACAGGGTATTCACATAGATAAAATAAATCTTGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAATCTTTAAAAGAGAAAAAAAGAAACAAAGAAACAAAGAAAGCAACAAGGTGAGGCAGACTGGGCTAGAACTGGGCTGCTGGTAGCAGTTGGGGTAAAGCAGCCCACGAACGCCACCTTAAGGTACAACATTCTTATCGAATGTAGTAGCAGCCGCTTGCATCACTGGCTAGGCTGTTTGGGGATGAGGCATTTTTACAAAGGAGCTGGAGTCAAGTGGTAGGAGGGAGACTTTAGAGGGAGATTAGACCTCAGTGACAGTGACAATCCTACGTCAGATTCTCCCTGACACTGCTGCTCTCCCAGAAGGCAAGCTACCCTCAAGGGCCCTGCAGCCAGGCCACTTCTGGTTCTTCAGCCTGTGACCCCTGATTTGGGAACGAGCCAGTCTTTAGTTTCTGGCTACAAAGCCCTTAGCAGCTGCCCTGCCCTCCCTGACTCGGGCTCTAAATACAGTGTTATTTGCTAATCACTGTGAAGTGTATCACACACATGTACGTGTTGATCACTCTCAAACTTGTGTCTCTGGCCTTGACCTTTTTTTTTTACAAGCTCCAACTGGAGTCTAAGGCAGCCTAGGACTACAAATGTCACTTCCTTAGGGAGGCCTCCATAGCTCTGAGCTAGATTAGCCTGTTATGGCCCATGGCTTATGTGGTCAGCCATGTTTTATCATCATGTCTCATACTCAATTGCTATTTAAATAATGCCAGATAGATAAATTTACAGAATGGGCTCTGAGAAGTCAGTGGGATGTAACACAGAAACTGGATGGATCAAGTTGTATATGGGTTGCTAAGCCACCTTGGTCACTTGGTTTATTGCCACTGAGCATCAATGGGACACCAGCGTACTCCCCTGCTAAGCTCTCCAGCATGTCTTGTATAGCCCAGAATCAGAATTGGCCAGTCCAAGTTTCAGACCAGACGAGAGCCTGGTTCTGATGGACCTAAGCTTCATTTGTACCACTCAGCCTCACGGTCTTCATCCATGAGAGTCAGCGGGATGTTCCCGTGTGTGCAGGGCCATACATAACTCATTGAGAGACTGGGGAACGGCCTTGTCTGTAGCATCTCAGAGAGTGGACGAACAGCAAATCTCTCAGCAAAGGATGTCTTCTCTGTATCTGGAAAGTAGACGGCATACAGTGGCTGCCCAGCAGTGCTGGGTAACATAGGAAACTCAGAAAGAGAATGCACTGGGGGTTTGTGTCAGCCAATGGGAGGCACTCAGAGAAGGGTATGCTTTTCTTTTCACAG
Seq C2 exon
AAGCACAATGAGGACTTTGAGATGACGTCATTCTGGTTATCCAACACCTGCCGCCTCCTTCACTGTTTGAAGCAGTACAGTGGGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104:ENSRNOT00000019512:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGCCCCAGATGCTGTC
R:
TCATCCCCACTGTACTGCTTCA
Band lengths:
239-2094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]