BtaINT0004135 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr24:49971592-49972530:-
Coord C1 exon
chr24:49972379-49972530
Coord A exon
chr24:49971682-49972378
Coord C2 exon
chr24:49971592-49971681
Length
697 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
ACATCTTCTTCTTTTCACAGAAG
3' ss Score
9.34
Exon sequences
Seq C1 exon
AGTTGAAACCGCAGGTGCTGGCGGGCGCGGTGCCCTGCCTCCCAGCCTACATCCTCTACATGTGCCTCCGGCACGCGGACTACGTGAACGACGACCTCAAGGTGCACTCCCTGCTGACCTCCACCATCAACGGCATCAAGAAGGTCCTCAAG
Seq A exon
GTCAGTGTCCAGGCCCCAGGTGCTGGTCTCGTGGGGAGCTGGATGAACACAGCAGCTCACTGTCACCTCAGTTCAAGTTCCTCAGAATCTCCAGCTCTGGAGGGAAATGCCGCCTGATCTCTGGACAAACAGGACCCCCAGGATGTTTTGCTGCGTGCTCCCCAGCACCCCCGTGCTGGACTCCAGACAGTTAAGAACCTGCCAGGCCATCTTGCCCAGTGGTCAGGGCAGAGCCCAGGCCTGCTGGAGTCAGGCTCATCTGTCTCCCTTGGCTTCGTTGTAGGAAGACTTCCTGTTTGCTCCGGACCTTGGGGTCCAGCTTTATCTAGAACTCACCCTTTCATGGTTGGTCCTCCCATGCTCTGCCTTCAGCCCAGTGACCTAGTACTATACAGCCCGGTTGCACCCCAGTTTTCTCCAGTGTGACTCCCAAGTGGCCCTAGACCCCAGCCACTCCCCGCTGGATGTGCACCACTGATCAGGGGCCTCCAGGCAAGGTCGTGCGTCCTCTCTGGGGCTAGAGGAGCAGGAAGGCAGCCTCGCGGGGAGGGCTTTCTTCCGTGTGCCCGTGAATAGTAAGGGTCTGCTTGTCGCCAGGCCTGGCTGGGGCCTCCTGGGTGAGAGAAGGCAAGGTGGATGCGTCAGGACAGATGGGAACTACCTCTTCATACCCAGGCACATCTTCTTCTTTTCACAG
Seq C2 exon
AAGCACAATGAGGACTTTGAGATGACGTCGTTCTGGTTGTCCAACACCTGCCGCCTCCTGCACTGCTTGAAGCAGTACAGCGGGGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019455:ENSBTAT00000061584:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCTCCCAGCCTACATC
R:
GTCCCCGCTGTACTGCTTCAA
Band lengths:
206-903
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]