HsaINT0108820 @ hg19
Intron Retention
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:7603]
Coordinates
chr18:47367735-47369762:-
Coord C1 exon
chr18:47369611-47369762
Coord A exon
chr18:47367825-47369610
Coord C2 exon
chr18:47367735-47367824
Length
1786 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
ATGTCCTTTTCTTTTCACAGAAG
3' ss Score
9.65
Exon sequences
Seq C1 exon
ACTTGAAGCCCCAGATGCTGTCGGGCACAGTGCCCTGTCTCCCCGCCTACATCCTCTACATGTGCATCCGGCACGCGGACTACACCAACGACGATCTCAAGGTGCACTCCCTGCTGACCTCCACCATCAACGGCATTAAGAAAGTCCTGAAA
Seq A exon
GTAAGCAGCCCCTGCAGAAGGTCATGGTTTGTGGTGGGTAGAGTGAAGCCAGCCCCTTACTGTTGCTTCTCTGTGTCTGGGTTTGGCTGTAGTGAATGCTCCTAGGGCTCCAACTTTGAAGGTAAATGAGCCACAGAAGCATCCATATAACCAGGATGCCTGGCAGTTCCCAGAGAAGGATGCTCAGGCCCAGCAATGGCAGAAAGCCGAGGACTCTGGTGTAGGTAGCCCTCCAGCTCCTCCCTGCTGAGCCTCCAGACATGCCCAGTGCTTACAGAAGCCTTGGCCTGCCCACTGCCAGAGGTGCTAGGGAGACATCCTGCTGCAGCCAAGGGTGTGTGGGCCTCACCCTGGAGCAAGTTCAGGGACACCCCTGAAACATGGGCCCTCTCCACCTTTCCAAGGGGCCGGGTGCTTGCTTCCCTGGGGGGTAACACAGGGAGGGCTGTGACATTCCATCACCTCCCAAGGTGAGGCAACCTGGGCCAGGACAGGGCTTGCCGCATGGTGTTAAAGGTGCTCGGGAATGCCACCTGAAGGCACAAGGCTCTTCTTGAATGTAGTGCAGCCACTGCAGAAACAGGCTGGCCTGCAGGGAGGGTGAGGCCTGTCCACACATGGATGAGGGCCAGGCAGTGGGGGAGGTGAGATTCTTGAGGGAGATGAACCCTCAGTGAGAGGGATTTCTACCTGCTAGCAGGCCTGTGCCCCGAGTATTATTGCTCTTAGAGACCATCTTTAGTTCTTACACATTACTGCTTCCAGGATACAAGCCATTCTCAAAAGCTCTGAGTCCAAACCAATTCTGGAGTCCACTGAGCTGCTGGTTGCTGCTCAGAATTCCAGAGCCAGCCTTTAAGTCTGGTTTCCTGCCCTCAGTAGCTGCATTGCCCTCCACAGGCAATTTTATCCACTCACGGCTCTAAAACATATCTGCATGCTCGTGGCTCTCAGATTTGTGTCTCCAGCCTTGATCCTCTTTCGTGAGCACCATCCAGCTGGAATCTTCGGCCAGTCTAGGCCAATTTAGGGCTGACACAAATGTCACTTCCTTAGGAAAGCCTTCCCTAATTCTGAGCTAAAATAGCATGTCCCAGCCCCAGCAGTCACTTTCTATTCAACCTCATTTCTTTTTTTTTTTTTTTCTTTTGGTCGTACCTCATACCACTCTGTCATTTAAATAATGATAACGCTTACTTGACAGAATGAGCTGCGTGAAGTCATCAGCTTTAATGCAGCAGCTGTCTCATAGCTGTTTGGGTTGCTGAGCAGGCTTTTTCACCTAGTTAGGGTTTGTAGCCATTTTCTAGAGAGTTAAAGCCATGATGCATCTGACATCTAGATAAATGGGACACCAAACTATTTTGCTGTTATGCTCTTCAGCATCCCTTGTGTTGGATAACTGGCAGTTCAGAAACAGAGCCAGCTAGCCCAGGCGGTTAGACGAGAGCCCGGGGCTGTTGGGGCAGAGCCTCATCTGTCACTCAGCTTTGCATTCATTCTTCAGCCATGGAAGGCAGCCTGTCCTTTATGTGTGTCCCTGTATGTGCACCACTGATCAGGAGACCAAGGTGGGGGTTCTGTGCACCATCCCTGGTGGTAGAGGAACACTCACACAGCCTCTCAGCAATGGGTCTCAACCCCGTGACTGGCAAGTGCCCTGCCCAGCCTCAGGGCTGCTCAGGAACACTAGGTAAGGGTAGGAAATGTGGGGAAAGAGGTACCGAGGAAGCATTTCACCAGATGGGAGCCACTTAGAGCTGAGGATGTCCTTTTCTTTTCACAG
Seq C2 exon
AAGCACAATGATGACTTTGAGATGACGTCATTCTGGTTATCCAACACCTGCCGCCTTCTTCACTGTCTGAAGCAGTACAGCGGGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306-MYO5B:NM_001080467:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAAGCCCCAGATGCTGTC
R:
TCATCCCCGCTGTACTGCTTC
Band lengths:
240-2026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)