RnoINT0110305 @ rn6
Intron Retention
Gene
ENSRNOG00000000480 | Phf1
Description
PHD finger protein 1 [Source:RGD Symbol;Acc:1303205]
Coordinates
chr20:5530653-5531173:+
Coord C1 exon
chr20:5530653-5530747
Coord A exon
chr20:5530748-5531092
Coord C2 exon
chr20:5531093-5531173
Length
345 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTGCCTGTTCCCAACCCCAGCAG
3' ss Score
6.1
Exon sequences
Seq C1 exon
GCCTCAGAGTCTCCACCACCCCCCAGCCCTAACCAGAGCTACCAGGGCAGCAGCGGCTACAACTTCCGGCCCACAGACGCCCGCTGTCTGCCCAG
Seq A exon
GTCAGTACCCGGTTCAGATGTACCCAGTCATTCCCTTCTCCAGACTCTGTCACCTGCAACTGTTTTCCCTTTCCGCCTTCTTGCCTCAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCCGAGGACCAAACCCAGGGCCTTGAGCTTGCTAGGCAAGCACTCTACCACTGAGCTAAATTCCCAACCCCTCATCTCAATTCTTGTACCAAAGAGGTGTAGAGCTAACTGCCGCCCAGCCTTCTGGGTGCGCAGGCGCACTAGCGGTAGTGTGAGCTCAGACCTTCTCAGGGAAGGCATGCTTCCCTGCTCCCGGTGCTGACCTGCCTGTTCCCAACCCCAG
Seq C2 exon
CAGCCCCATCCGGATGTTCGCCTCCTTCCACCCTTCTGCCAGCACTGCAGGGACCTCTGGGGACAGTGAACCCCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000480:ENSRNOT00000059548:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]