RnoINT0129325 @ rn6
Intron Retention
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27543418-27558973:-
Coord C1 exon
chr17:27556057-27558973
Coord A exon
chr17:27544225-27556056
Coord C2 exon
chr17:27543418-27544224
Length
11832 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
TACTCTGCTTGCTTACACAGACA
3' ss Score
7.14
Exon sequences
Seq C1 exon
GCCTGGTGTGAAACAAACCTGCGTCGGTGCATCAGCGAGCAGCACCGCTTTGTGTGTGACACCTGCGACAAGGCGTTCCCCATGCTGTCGTCACTCATCCTGCATAGGCAGACCCACATCCCTGCCGATCAGGGACGGGAGAAGCTCCAGACTAAGACCCTGGCTGCTGATACCTTGGACCAGAAGGTCTTCCTGGCCTTCCTAGGCCTGCAGCACACCAAAGACGTGAAGCCTGCACCTGCTGAGGAGCTCCTGCCAGACGACAGCCATACAATACAGCTCCAGACACTCAAGTGTCAGCTACCTCAGGACCCTGGCTGCACCAATGTGCTGAGTCTGTCTCCTTTTGAAGCGGCTTCTTTAGGTGGTTCTCTAACAGTCCTCCCAGCCACAAAGGAGAATATGAAGCATCTGTCCCTGCAGCCCTTCCAGAAGGGCTTCATCATCCAGCCAGACAGTAGTATTGTGGTTAAGCCTATTTCAGGAGAGTCGGCCATTGAGCTGGCAGATATCCAGCAGATTCTAAAGATGGCAGCTTCTGCTCCTCCACAGATCAGTCTTCCGCCACTTTCCAAGGCTCCTGCCACCCCTCTGCAGGCAATTTTCAAGCACATGCCTCCCTTGAAGCCAAAGCCCTTGGTCGCACCCCGGACAGTGGTAGCTGCCTCCACACCCCCTCCTCTCATCAATGCACAGCAGGCATCCCCGGGTTGTATCAGCCCTAGCCTTCCGCCACAGTCCCTGAAGTTCCTCAAGGGGTCTGTGGAGGCAGTCTCCAGTGCCCATCTGCTACAGTCCAAGTCCGGGATCCAGCCAAACACCAGCACACAGCTCTTCCTGCAGCAGCCTGGGGTGGAGTTACCAGGCCAGGCCGAGATGAAAGCCCAGCTGGAGCAGGACAGCATCATTGAGGCCTTGCTGCCCCTAAACATGGAGGCGAAGATCAAGCAGGAGATAACAGAAGGTGACCTCAAGGCCATCATGACAGGCCCCAGTGGCAAGAAGACCCCCGCCATGCGCAAGGTGCTCTACCCCTGCCGCTTCTGTAACCAGGTGTTTGCCTTCTCTGGAGTCCTGCGAGCCCACGTCCGCTCCCACCTGGGCATCTCGCCCTACCAGTGCAACATCTGTGACTACATCGCCGCAGACAAAGCTGCTCTCATCCGCCACCTCCGCACGCACAGCGGGGAGCGGCCGTACATCTGCAAGATCTGCCACTACCCGTTCACCGTCAAAGCCAACTGTGAGCGGCACCTGCGCAAGAAGCACCTCAAGGCCACCAGGAAGGACATTGAGAAGAACATACAGTACGTGAGCAGCAGCACGGCTGAGCTGGTGGATGCCCTCTGCTCCCCGGAGACCGTGTGCAGGCTGTGCGGTGAGGATCTGAAGCACTACCGCGCCCTGCGCATTCACATGCGCACGCACTGCAGCCGTGGCCTGGGTGGCTGCCACAAAGGCCGGAAACCCTTCGAGTGCAAGGAATGCAACGCCGCCTTCGCGGCCAAGCGCAACTGCATCCACCACATCCTCAAGCAGCACCTGCACGTGCCCGAGAAAGACATTGAGAGCTACGTGCTGGCCACCGACGCCGGCCTTGGCCCCGCAGACACGGCCGCAGAGGCCTCTTCCAGAGAAGAGAGCAGCTGTGTCACTTTCGCCGAGTGCAAGCCCCTCACCACTTTCCTGGAGCCCCAAAATGGCTTTCTTCACTCGAGCCCCACCCAGCCCCTGCCTTCCCACATCTCTGTCAAGTTGGAGCCGGCCAGCAGCTTTGCAACAGACTTCAACGAACCCCTTGACTTTTCGCAGAAAGGCCTGGCACTGGTCCAAGTGAAGCAGGAAAATATGTCCTCCTTGCTGAATTCTTCCTCCTCCTCTGCCCTCTATGACTGCTCCATGGAGCCCATTGATCTGTCCATCCCCAAGAGCGGAAAGAGAGGAGACAAGGACACAGTTGTTTCCAGCGACGCCAAGAAACCAGAACCAGAAGCTGGGAAAGCTGAGCAGCTCTCTCCCCATCCGCCACCCTGCCCTACCTTGTCAGTGACTGTGGAGCCCAAAGGGAGCCTGGACAACCCAGCAGGCACTGTGGTGGCCGTCACCACGGCTGCCAAGCTGGAGCCCCACACCCAGCCCCTCCAGGGCTCTGTGCAGCTGGCTGTCCCCATCTACTCCTCAGCTCTCATCAGCAATGCTCCCCTCTTGGGCAGCTCCGCCCTCCTGAACAGCGCGTCCTTGCTTCGGCCCTTACGGCCAAAGCCTCCCCTCCTCTTGCCAAAGCCCGCGATGACAGAGGAGCTGCCGCCACTGGCCTCCATTGCGCAGATCATCTCCTCTGTGTCCTCGGCTCCTACTCTGCTGAAAACGAAGGCAGCTGACCCCGGGCCGTCGAGCACCAGCAGTAACGCTGTGGCCACAGACAGCCCAGGAGGCTCCATCCCCAAGGCCTCCCCTAGCCCCACAGACATCCCAAGCTCGAGAGAACCCACTGACCCAGCCCCTACAGCCAGCAGCCCCGAGGAAGCCTCGCCTCCTGAACAAGGGCCGGCTGCCTCATCCAGGAAGAGGGGCAGGAAAAGGGGAATGAGAAACCGACCCCTCCCCAACAGCAGTGCTGTGGACCTGGACTCCAGTGGGGAGTTTGCCAGCATCGAGAAGATGCTGGCCACCACAGACACCAACAAGTTCAGTCCGTTCCTGCAGACGGCAGAGGACACTCAGGAAGAGGTGGCTGGAACCCCTGCAGACCACCGCGGGCCCACTGAGGAGGAGCAAGGCAGCTCTGCGGAGGACAGGCTGCTGAGAGCAAAGCGGAACTCCTATGCCAACTGCCTGCAGAAGATCAACTGTCCCCACTGTCCCCGGGTCTTCCCTTGGGCCAGCTCCCTGCAGAGGCACATGCTTACACACACTG
Seq A exon
GTAAGAAGGGCCTCAGGGCTCACCAGATGGTGAGTCTTGAAAGAAAAGAGTGAGGGGTAGGGGTAGGCCTAGAGTTCGGGGCCCTTTTCTCACGCTTCATTTCTTCTTCGTGCCTGTGGTCTGGCCACCAAGGCTTATCTGTAAATGAATGTATCAGACACAGGTGACAGTGGTCATAGGCTCCCTCACCTCTCTCTGCATAACCTTTGCCTGACAATTTTCAAGATGTTTTTAAGTGTGGAGGCCATTCCAGAAAAGTGGGACTTTGCAGTAAGATAACAGCCGTGCCACGAGCTGTGACATGACCTGGTGTCTTCAGTGCTGCCCTTTTATTTTGGACATTCTTTACATCCATGTCATACAGCAGAGTGGGATTGGATGTGTTTCCTGTTGGCTGAGGTAGCTGCAGCTTCCCTTATTTAATTTTGACCTGCTCTCCGATTTTGAATACTTATGGAAGATAGTGGTGATTTTTTTAAAGTTCTATTTATTCTAAAATTGTCAGCTGTTGAGGAAAACATTCTAAGTATAGTTTTCAGATGTCAGTTTCTAGAAGTTGAATTTTAGAAGTTTAGAATAGAGAATATTCATTAAATTATTTCATGCCTGGTGCTTCTAATATTTCAATAGCCATATACTTTTCATCACAATTATAATTTTCTGAATCGTATCACAGGATTTGTATCATTGTTCAGTGGGCGGGCGATGATACATTCAATGAAGCCCTTACCTTTTTGGATTTTACAGTTCAAACATTAATAGATTGGACCAGAAAAAAATTTATTCTTACTATATTTGTAGGACAGGATTGCTAGTTAAAATGCAGATCACCAGCAAGACTTGATTTTCAGACCATCAAGTATTTTTGTAGTATTTGGGATAGACGGATCAGAAAGACGTTTGGATTTTACTGCTGACCGTGTCATTTTGCTTGCAGACTGTAGACGCTCATGGTTGTTAGGAGGTTCACAGCAGTACCCTGAGGTGCTGGTGCAGAGTGGGTATGAGCTGTACTCTGCATGGCGGAAACACTGTGGGTAGGGACTATAGCCCAGTGACGCCTTTTGAGCCGATCAGAATGCTGTGATTTCCTCCCGCCCCTCCCTCTCCTGGAGTTGAGAGCTCTGAGCTTGGTAGACACTGAAGATTTTCTGTAGAAAATCTCTCAGCAAACTGACAGTCTTCCTGGAAGCCAGGTGTCCATACATTTCTCTTCCATCTGTGATGGCATCTGCAGATACCAGAGGCATGGCCCGATTCCCTGGTATTGAACACTGGAACTCAGGAGCATCAGAACCCATTCAGTCCCCAGGACGCACATGGTAGAAAGGAAGAACCAACTCCTACAAGTGCCCTCTGCCACGGCATGAGCATACACACACACACACACGGCATGAGCATACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGAGAGAGACAGAGACAGAGAGAGAAAGAAAGAGACAGACAGAGATTCCACCCAACAGCGTTGTGCAAAGCCCATTTTCAACTGTAGTTAAGCAAACTGCCTCCATCATGAGAGATGGCCTTTCCACCCTCTCAACTACTTTGTAGAATTATCCCAGCATCTGTACTTGGTCTCAACCCATTTCTCCATTCTACCCACTCCCTACCACGGAGCAAAGGGGCTGAATGTCCAACCAGGGGTCCACCTGCTGACTCCAGCACAAACAGGACTTTAGCTCTTTACCCTGCTTAGTTAACTTCCAAGAACGTCATTTGAGGAGGAAGCTGCCATCTCTCATGTCCTCTGGGGTCATTTCTACATACTTGATTTCCTCCCTCCTCCAGCTCTCCAACCTGTGGCTCACTGCTCGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGACATGTTGTACCTCATGAGACAACGCCACACTGTCTCTGCCAGTTCCCCTCGCAGCATCGTCCCGTGTCTTTAGGCTACAGGAGGACAAAGTGCCAGCAAACACAACCAGTCCCTTTCAGCTTCTGCCCTTGTCTCTTCCTCCTTCCCTTTGCTCTGGTTCCTTGTTCCACAGTGACGGGTCAGGGTGGTGCAATCTCTGAGAGCCCCTCCGGCTGTAACATCTGGGGTTCCCTATCTCACTCACTTTCTCATGGGTGTGTGGAGCTCTTTGCCAGCTCCAGGGCTCCTCACCTCCTACCCACTGCTGAAGGGTAGCAAGCCCTGACGTTTACATTTGGGAGATGCCCTTACAGTATAGAAAGCATCGTGAACCAGTTGTTCCTGGTTGCCTTTACTAAGGTTTAATTGAAGTTTTCTTATGCGAGTTTGTGTCTGCACATATGTGTGCGGGTATTTGTGGAGGCTAGAAGAGGAGTTAGAGACCCTGGAGCCAAGGTTACAGGTGCCTGTGAGCCCAGAGATGGAGTTGCTGAGAGCCGGACTCAGGGCTTCAGGAGCAGCAGGTACTCCTCTTTACCACCTGTGTCTCTGGCCTGTGTCACTTTAAGTGGTTTGCTTTGGCTGCAAAAGAAGAAAAGAATTACCAAAAGAACAATGTTTGGGCCCCAAGGGTAGAGTTTGTGGGAAGTCCAAGGCTGCTTCGCTCCTACAGTCCTGTCAGCACAAAAACTCCATGTGAGTCCCGGGCTAGTACTAACCTTGATTCTCTTCGGAGAACATTTGCAGCTCATCCATTGAAGAGTTGACAAACAAGGTCCCGTTGTCCTCAGCAAACTCTTGTTCCTTCTGCCTGGCTTTGTTCCCGGTGCCCTTCAGATAATGCCTCTCTTCCTTTTCTGACTGCTCTGCATGAATGAATTTGGCTGACTGGTGGCTTTAATGTTCACATTGGAGTGGGGGACATACAGGCCCTGGGTACAAAAGTAGCCCCTATGGTTACAGCTGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACAGGTCAGATATGGGTAAATTCCACTAGTGACTTTTAGACATGCTATAACATGCTAAACACGCTCACCATTTCTACATCTCTGCGAGGCAAAAAGCATATTACCGTTTTAAAAATGATATTGCAGCAAATATATGAGCTTTAAATGATGGTGCTGCTTGAAGAGGTCCTTCTTACGATCCAATGCTTGGGCACCATGGAACTGTCTTTTAAAATGGCCCCGTGTGACTCTTTATCACAGAATACAGCCTGGTTATCCAAACCATGTGTAAAGGGAAAGCATGCGAAAGGGGGAAAGGAAATCACTTCCTGCATAAACACCTACCATTTTCATCTGGAATCCCTGCATAGGGGAGTCGGGGAGCTGGCTGGCTGGTTAAGAGGAGAGCTCAGATCCCAGCATCCATGTTATACGTTGTGCATCTTACAAATGCTTAAAATTCCATCTTGAAGAGACTCCACACCTTGTTTGCCTGCCCCTCCCCCATGCACAGGTACTCATGCATACAGAGGCACAAATAATAACTAATTTAAAGAATCCCAGTATGGTATAGTAGCTTCTAGCCTTTAACTTTTTTTTTAAAGGCCCCTTCCCCCCCTTTTTGGTGCTGGTACTTGAACCAGTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTCCGTTCACTTTCTCCCTATCTGGCCAGGCCTGAAGAAGCTGCCATCTTGCTTTTTGACAAAGAAATTTTAAAATATTTGCTGTTATTAATCAAAGCAAAGGAGCCACCTGAAAAATACACGGCAAATGTTTTACACCCGGTCACGTTAGGTTGTTTTTTTTTTTTTTTTTTTTTAATGAGGCTGTTTTCTGTGCTTCAAGCAATTGGTGGGTTATCAACTGGTGTGCAAAGGTCCCTTGTCTGTACACATAGCAGGATTTTCATACAGCTTCCCCAAGGCCTCGAGGTATGCTTGGATTGATGGAAGTATTCGTGTCTGTCTGCTCACCCCAACCCCATATACCTCTTGTCTGCCTTTCTACTCCATGGAGTCAGCAGTGCTGGTTGGAGTCTTTGGCTGGTTGGTTGGTTTCATAGATGGTGGTGGTTGCTGCCTCGTCAGAGATGAGCTGTGCGTGCCTTTGAGCTGCATGGATCCCTGGCCCTTCTGCACTGAGACAGCTCCTCCAGAGGTCTGGGAGTGACAGCATAAAGGATGTGTGCTCTCGGGAGGGAAAAAATGCCCCTTGCCTTCGATTATCCCTGTTAACAATCCAGGGCTCATCTTCATAGGCACGCTGGGTCTTCCTTCCCCTGGAAAACCAGCCCTTCTGGCTTGTTCTAGCAGCAAGGCCCGGGGCCTGTGCAGGGTCTCACACGCTGCGCTAGTCTCAGCCCTGTCAGTCTCTTAAGTATTAACCTGAAGGGAAGGCCCCTGGTTTGTTTCCTGGGAGCTCTACCACCACGTGACTCTCCCTGTTAGTTATTGAAGTCACCTACAGGTTCAAGGTTCCAAGATAGCAGCACTAGGCAGCAACTCTAAGGTGTTTTTAGTCCCCAGTGGAAGCAGAAACTGGGGCCTGGAATCTGGCAACTGGGGCATGGGTGAGGGGGTGGAGCAAACCAGTGACACTGAACAATCCATGTCTCCTCTCCTGCAGCTGCCCTTTCCCCTTCCCTCTTCCCCAACCCTTCTCTCCCATCTCTTTCTCCTTTCTTTTCCCTCTCTTTCCTCTGCTTTCTTCTTTACCTCCTTCTTTCCCACTCTCCTCTCCCACTCTCTCATGCACGCTCTCCCCCTGAGCCCATGCCCTTTCCCCTCCACATAGATTTGCACAAGCCCAGGACTAGCCACAGGGGAGCTCCCAATGCATTTTGAAACACAATGTTTACAGTGCAAACAGAATCAAATAAGTGAAGGGTATAAGCGGGCCAAAGCAGGGAAAGAGGGCCTCTCCTGCCAACCATCAAGTCGCCCTGTTTGTAGCCCTGGCCTGGGGTTTGGGCGGACCTCACCTCGGCCTCTGTGGAGCAGAGTACATAGCCTGATGCAGGCTAGCCTCTCTGCACACTCGCCTCTGTGTGCACACTAGCACACTCGCTCTTAGCCTGAACAAAGCAAGGAAATGAACACCTGGGAACCCACGCCATGAATCCTCCTGTCATTGCCACACAGGTGGTGGGGGAGGGCTCACTCTGACTTCTTTTTGGTTCTTTTTTTTTTCAGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAATCGCTCTACCACTGAGCTAAATCCCCAGCCCCTACACTCTGACTTCTTAATATGGGCCTTGAAGGTTGCCAGGGGTTCACCACCTCCCCTGGGGAGGCTTGAGCGTGCAACACACACACACACACACACACACACACACACACACCCTGTCCATCTCTTTGCTTCAGTACTGCCTGCTAGGCTAGTGGTAGTGCTTTTTCTCTGGATCATGTAGGAATTGCTTGTCGAGCCTTAGAAATGTGGTGTGAATAGTTTATTGTCTTGCTTCAAACACATGTATCTTGGTTTCAATGTTAACTTTCCTTTAGTCTCTTGATGACAACTCCCTCCATTATACGAAGGCCAAGGGAAAATGATTATTTCAGTCATTGTCTCTCAGTTTCTGTTTCTTTTTGTTAAGTGTGTTTCTCTTTATTTTCTTAAAAGGAAAGGGTGGAGGGTTGAAGAGACGCCAGCAATCCCAGGAGAGTAAATCAAAAGCAACATTTCTTTTCCATTGCAGTAGAAAGCCAGATAAATACATATTTTTTTTTCCTGCTTCAGGTCAGAAACCCTTCCCCTGTCAAAAATGCGATGCCTTCTTTTCTACCAAATCTAACTGTGAACGTCACCAGTTGCGCAAACACGGAGTTACCACCTGCTCCCTGAGAAGAAACGGGCTTATTCCCCCAAAAGAGGGTGATGTTGGATCCCATGATAGCACAGGTAGAGCCTCTAGGTGATGGAGAACCAGAGAGAGGAGGGAGCTCCCCGGAGCTCCTATAAAGCTGTGTGAGCTGGAGCCTAGCACTGAGCAGCCACAGCTTAGGGGGCCTAGCCCCTGCCGAGACTGGGTGCCACCGAAACCTGTGGAACCGGGGAAACAGTGTCAGTGCCCCGGGACCTTTTGGAGCTGCTAGGGGGAGATCCAGCACCTCCCTTCCAGAAATTGCCGTTGCTCTGATCCCGGAAGGTGGGGTGAGCTGGACGTTGTGCTCCTGATTTAACTCCCTGGAGGAAACTCGAAGCTCTGAAGTTTGGGGGACCCGGGTTCTGCAGCCTTCATGAGCAGCACTTGCCCCAAGGACTCAGTACTGCAAGAACTGTGACCCCCCAAGCTTTTAGCTGGGTGTCATCGGGTTGAGGTGGGGCAGGGCTTTTCTTCTCAATAAATCCTCCCAGTATAAACCTGTCCTCGTTTGAAAAGCCCTCTGCATGTCTTTCTTAATCACGACCCTGCTTGGATCTGGGCATTACTATCCTGTGCTGATGTGTGCTTCCTCCTTGGCCCTTACAGAGTAATTAACACAGCTCTGTTCCTCTTCTTGCCCCCGCCTCCTGTATTCACTCATGTCCTCTGTTTAATACTCGCCATGGTCCGACTGCTGGAGCGTGCTATTCCTACCCGCAAAACACACCAAACAGAAGTAAGCTGCCTCGGGCCACTTGGTCCAGCCAGGTGGCAGGGAGGGCATTGCATGCACAGGCTTCAGCTCGCAGGTGTTGGAAGTTAGCATTTGCCCATGGCTGGGATCTAAACCAGCCTCTGATGTGCTCATCTAGGGTTGCAGCTGTGTCTCGTGACCTCTCAGACTTTGGGGGGATAGAGTGCTGTGTAGTTTGGAGAGGGGCACTGCAACCCTATCAATGTAGACAGAGTGACAGTCATTGATTCCAACTCCCTTGTCCTAACCTCAGTGGTGAGACGTCACAGTGGAACGGATATCTAGGAGAGCTGACCCCAATGGCAAGACACCTTTACCCTCCCCACGCTTTATTCAGCCCAGTGAAAGCAAAGCAATGGAATGCCTTGGGCTCGTTGGGTTCTCCTGCCCAGGTCAGACCCTCTAAAGCCAAGAATGGTACACCTGGTTTGCTAACCCCTCCCCAAACCCTGACTTCCATTTCCACATAGTTCTCCGGGATCTAGGAGTAAGGAAAGGTATCCTGCCGAGGTTGAGCCTGCCCTGGGAGCCAAGCCTACCCAGCCGCCTCCTATGCTGCTGGAAGCCCAAGGCTCTGCAGCAGCTGTCTTTGCCACAGACTGTCCTGTTAACGTTTAACCATCGTTGCCACCGTACCTATTAGACTGGAACATTTTCTTACAGCCTGCTTTACAGAATGGTCCTGTGATCCTCCCCAAACCAGTTCACGAGGGAAGGCGCTGACATGGGGGTTGCTGAGGGGTGGGAACCCATGTCCTCGGAAAAGTCTCAGTCACCGATCCTGCTCATCCTGGAGGCCGCATACAGGAGCTCTGCTGACGCCAGAGCTCGGTCAGAATTTATGGTTTGAGCTTAGCTTTGGCGCAAGTGTTAGCCTGTGGGCGCATTTATTTTTTAAGTTTACAATTACAGGTTTTCTGTTTCCAAGGCCTTGCCCCAGAAGTTATATAGATTTTCTTAAAGGGACAAAGCCTCTTAGAAGTCACTGAAAGTTTTAAGACTATCAAAGAACAGCCCGTGGTGAGAGAGAGGACTGATTGAGGTGGGAGAAAAAGGCAGAACCAGGGACGTAGTAGGAGTTGAGGGAGGAACAGGGGGGCAGAGGAACAGGTTTGGGGTTTTTTTTGGGGGGGGTGGTTTTCTGGTTTTGACCTTGGAGACAGGATACCGTAGGCCACCCTTAAACTCAGGATGACCTTGAACTAGTGCTCCTCCTGCTCCTGCCTCCGAAGTGTTATCACAGAATTATCACCACACCCCAACTGCAAGTCCGTCAGTTTAGGTAGGCCATCGAATTACCTCAATCCCAACCAGACCCTTTTAAAAGGACAGGAAATGACAGGGAAGTTACTGGAGTTTTCAAGGTTTGGTTTATGTGCATATAGATTGGATTCTTTTTAAATCCCTAAACATGTTTTCTAATGTCAGCATCACTTTTCTGACCACACAAAGTCTTCCATGAAAATGTACCCCAGATTTCCTCCTGTACCTGTTGCTAAAAATACTAAGGTGGGGACAGTTTTCCCTTCTACGTTGTATTAAATATTCGTTTTTACACTGCTTCCCTCTGTTACGCTGCTCTTGAATGTCCTTGCTTCTTATTCAGGGGATTCCGGGAAGAGCCAGGTAGGCACCTGGACGGGACCTTTTACAGCATAAACATGAATGGCTTCTTTAGATACTTCGGTATCTTACGTGTGTGAGTGCTCCTCTGTCCGAATGTATGCCCGCAGGACAGAAGAGGACATCAGATCCAGTTATAGATGGTTGTGAGCCAACATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGACCAGGCAGCCAGTGCTCTTAAACTACTTTTGCTTGTAGGAAGCAAGAGACCCTTAACCATGGAGATGACCAGCAAAATACATGGGGTTCTTGAGAAGCCATAACAGGACCTGTCTTTTCACATTGATTACTCACTCTGTACATGAGGAGGTTAAGTCTATTGTTACCAATATCGTAAACCAGGCCACAGGCTGTCCTGCTAAAACACTCCCCCTAGTGGAAGTCTGGGTGCAAGAACTGTTCAAAAGTGTGGGCACCTTTGTACACAGAAAGACCTCATCAATCCTTAGAACAGAATTGTGAATGGGACGGTTCAGACTGAGGGTGTGCGCTTGGCTTTGTTTTCAGGATTCATCTTTATTTTCATAAGTTTGTCATTTTAAATACATACTCTCCAATTCAAACAGCCTATGTGCTGGGTTAGTCTAAGCCACTCTAGGGCTAAAATGGGAGGAAACACAAGTTTGAGAGACTACCCCAGGCTACCTAGCAAGCTTCTGTTTCAAAACTAGAAAGAAATGGTTTTGCTGCAAACCCAATAACAGGAACAGCCTAAGTGTATACTAGGAAAAAAAAAAGAATTAACCAGAAATTAGCCTTATTTTTAAATTGGACTTGGCTTATTTTGAAAAGTACTTGCCATACAAGCTTAAGGCCCTCCCCAAATTAAATCCCTAGCACTCATTTAAAAAAACAAAACAAAACAGTAGTGTTGAGTCAGGCCTAAAATCCCACCACTGTGGGAGCAAGAAGATTGCTGGAGTGTGCTATCCCTACCTGCAAAACACACCAAACCCCTAGAGCTTTCTGGTCCGCAACTCTGGACAATCAGCAAGTTTCAGGTTAGTTGACTGTCTCAATAAATAAAAAATAGTAATTGAGGAAGACACAAAGTAGATGCTGACCTCTGATTTCCAAACACACACACACACACACACACACACACACACACACACAACTGAGCAATCTAGGCATCCTGTGCTTTTTGTTGTGGAGTCTAAACCAAGACCCATTCCATAGATTTCCCCACTGTGACTCGGGAAAATGAGCAGAGTTTTCCTTTGTGCACAGTTAAACACTGGTGTACACACAATGGGCCCCTGCTTCCTGCTATTACAGTTTGTCCTCATTTAATTCTGAAGTCTCTGGAGATAACCACAAGGTGGCCTCTATCAGGTGCCCATGTCTGAGGCAGCTCCTCCCCAGTCCAAGACCTGCCTTGATGGCACATGACAGACACTGAGGAGGAATGATAGGCTTGGAAGTGGCCCTCTGGCTAATTCTACCTCAGCCAGTAAGAGTGCATGAATTTCAGCTGCCTCAGGCAGTGATCAGAGAGGTGCCTCTCCTAGGGCGCCTTCTGTATTTGCTGTAAAACAATGACTTCCTCACTCTTAGTAGTAAAGTCCTCATTGAGTCCTCAACTAAACAGTCAACTTCCATTTACTGTTAAAACCATTCAGTCCTTACTCAACCATAATAAAGAAAAGGTAACCTCCCAATACTCCTCTTCCTCCTTTCAGCCTCATTCTGTTCTTCCTCCTTATTCTTTTTCTTTTTTGAGACTATCTCATAGCCTAGGCTAGCCTTGAACTCATGGTGAAGCCCAGCCTGGCCTCAAACTCTTACCTACCTACTTTAGTTTCTGAAGGTCTGAGATCACAGGTGTACACCAGTGTGCCCGGCCTTGGTGTCATTAATGTTGGCCACGGTTCCCTCTTTTAAGGTCACTGAAAGCTGGTGGACTTCCCATGTCTGTTTTGCTGGGGGGTGTGTTGTTGTAAAAATACAAAAAATTTAAAAAGTATGGTTGTATTTTATCCCCCACTAGGTCTGACACCATGATGCCCCAAGATATCTGCTAGACATCTTAATTCTCAGTCAGCAAAGCCTCTCACCCGCTCTGCTCCATCCCATATCACACTGCCAAAGGCCTCTCTCTGAGCCTGGCAGCAATCTCTCTACCTATCTAGTTCCCCAGACAGGTTTCCATGCCAGAAACACACATCCCAACTCCACGGTGGCCCAGACCAGCCACCCAACACTCCATCACACATTAATCTACACATGAAAGAACACACAACACAACAACCTTTGGCGGGTTGATAAGAGATAATTGCCATCTAAACAAACCCTGTACACATCCATCCTTTAAGAATACTGGCTGGAGAGATGGCTCAGGGGTTAAGAGCACTGACTGGGGAAATGATGCACAGATTTTGTGACTCCTCCAGAACACACAGAATGTGTTTTCCTCCTGATGCAGTCCCACTGTGCTTTTCCCTGGCTGCTTTTTGGTATAAGACATTGTAGTTAGGGCTGGAGGGATGGCTCAGTGGTTAAGAGCACTGACCACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGTTCACAACCATCTGTAATGAGACCTGATGCCCTTTTCTGGTGTGTCTGAAGACAGCTACAGTGTCTTTAAAAATAAATAAATCTTTTTAAAAAAATAAAAGAACACTCATAGCAACCTGTAAAGATACAGCGTGAAATCTTAACACCACCCGCCATATTGTCCTGCCACAGCTTCTCTCTCCCTCCTGTCTCTTCCTCCTTTCTGTTCCAGTCTCCTCCTCTTCCTTCAAACTTTCCTCCCGCCCATCCTTCCTTCTTGTCCAATGACAGGCCTCCTATCTTGTACCTGCCTTACCTGTGACACCATCCCACAAGGGGTGGGGGGCGGGGCAGACAAGTGGAAGCCAGAAATCAATGCAAGAGGCTCACCGTATAGACCCCTGACCTTGTGCTCACCCAGTCCCTCAGAGCCACCTCTCCTCCCTCTTCCCCATGCGATGCTCACAGGTGCGGGAGCATGTTTGGTCTCTGGCCTCTACCTGGAGATTGTCTGTGGACCGTACACACAGAATCTGTGAAACTCTTTAAGGACCACGTTTGGAAAATGGGGGGTTGTTCTTGTGTGTGTTGCATGTTTGTGAAAAGCTCTTTGCACTGGAAAGATAACCCTTACGACTTGGCTTCCTCAACCTCCCTAGTACTTCGAGTCTCTGGAATGCACGCCCTCTCTGTCTGCACTGCCTGAGTCACTCACACCTTCCTGGGGTTGGGGACAGCTGAGGATACATAGGTGTGATGGTGGAAGGCAGGAGTTCTGAAGCACAAGACATTTCCTTGGGAGTGTGAAGGCCGGTTCGGCCCTTATAACTCCCAGATTCAAAAGTTCCTCACGAGGTTTAGTATCCGGGGTTGCAGGGTGGGTCTGGCCAAGTTCCAGTCGAGCCCTTGAGAAGGGTTTGTTCAGGGTCGCCTCGTCTGAACCTCTTCCCTACTCTGCTTGCTTACACAG
Seq C2 exon
ACAGCCAGTCAGACACAGACACACTGACCACCCCAGGTGAGGTGCTGGATCTCACAGCACGGGACAAAGAGCAGCCAACATCAGAGGGAGCCAGTGAGCTCAGCCCAGCTACGCAGGACCTTACAGAAACAGAGGCCAAGGCAGAAGCAGCCCCACCTGAGGAGGAGGAGGAGGAAAAGGGGACGGAGGAGAACCCAGAACCAGAGTTAGAGTGCCGCGTGGAAGAGAGCTCTGGGGATGCAGACGCCCCGGAGGAAGACACAGCCAGCAACCAGAGCCTGGATCTTGACTTCGCCACCAAGATGATGGACTTCAAGCTGGCCGAGAGTGAGGCAGGTGCTGTGGACAGCCAAGGCCCGGCCCAGCAGGAGCCGAAGCATGCCTGCAATACCTGTGGGAAGAACTTCAAGTTCCTGAGCACCCTAAGTCGCCACAGGAAGGCGCACGGCTGCCAGGAGCCCAAGGAGGAGGAGGAGGCGCCTTCGCTGGAGAATGAGAGCCTTGGCAGAGCAGTTGAGGGGCCCTCACCTTCCCCTGAGCCTGAAGAGACACCTGCTGAGTCCTCAGCCACAGATCCAACGGCAGGAACCGGGGAGGCCTCGGGGGAGAGACAGAATGAAGACACAGAGAGTCCCTCTGATGGGGAGGGCACGGCTGAGAAGAGGGGTGACAGTGACAGAAGACCAAAGACAGACTCCCCCAAAAGCATGGCCAGTAAGGCAGACAAGAGGAAGAAGGTTTGCAGTGTATGCAACAAGCGGTTCTGGTCCCTGCAGGACCTCACACGGCACATGAGGTCACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701:ENSRNOT00000060218:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=NA C2=0.926
Domain overlap (PFAM):
C1:
PF139121=zf-C2H2_6=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=2.6),PF134651=zf-H2C2_2=WD(100=2.7),PF134651=zf-H2C2_2=WD(100=3.6),PF134651=zf-H2C2_2=PU(38.5=1.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=8.5),PF134651=zf-H2C2_2=PU(40.0=3.7)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]