RnoINT0131068 @ rn6
Intron Retention
Gene
ENSRNOG00000002104 | Scaf4
Description
SR-related CTD-associated factor 4 [Source:RGD Symbol;Acc:727896]
Coordinates
chr11:30381426-30385648:-
Coord C1 exon
chr11:30385457-30385648
Coord A exon
chr11:30381548-30385456
Coord C2 exon
chr11:30381426-30381547
Length
3909 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TCCCTGCCTTTGTTACGCAGCTG
3' ss Score
7.77
Exon sequences
Seq C1 exon
CTACTATCGCTGGTATAAATGAAGACACTACAAAAGACTTATCTATTGGAAATCCCATTCCAACAGTGGTGTCTGGGGCTAGAGGAAATGCCGAGTCTGCTGACAGTGCGAAAATGTATGGTTCTGCTGGGCCACCTGCTGCACCCACGAGTCTGCCCACCCCTCCTGTAACCCAGCCTGTTTCACTGCTTG
Seq A exon
GTAAGTTCATTATTCTTTTATTGGTACTTTTTCCCCTTCAAGTTTGGCTCTTTAAAAATACTGTGAATTTTGGCGGAGTAACGCCCAATGCCGTGTTCCTCTGAGGAAGATCTTAAATGGTTTGTGCAGTTGTTTTTACCAGGTCACCTTATGCCTAGTTGTCCTGAATAAAACATTTCCATCTGCATGTGTTAATTTGGTATACAAATGTGATTACTTTCTGTGAAAGTAATTGTTATAGTTGTGTTCTTGATTAATATGATTCCATACTTACAGCTCTAGCAGCTGGCTCCTTGTAGATATTTCTCTCTTCTTATCTATCTGAAACCCCTGGACTTTGGGAGCTTTTCAAGTACATAGACTGACAAACATATCTGACAGTCCTAGCAGAATGGCGTCTTTCAGTGAGAGCTGTACAGTTGAGGTGGAGTTGAGGCCTTTCTCACTAGCTCCTTGCTTTTCTTCTGCTGCAGTTGCTCCTTTCCACAACCTTACCACTGCAGTCAGGGAGAGGTCAGCCTAGAGGCTTTACAGTTACCCTCATGTCCCTTACGTGCTTCCCATCACATAGTTTTTATACTAGACCATCTTTTAAGGTAATAAGTCATACTTGAAGTGATATTACCAAGTATAATCAACATTTGATTCTCCTAATGGGAAATTAGTTCTTATGAGTGTGAGTCCATTTTATTTTCAGAGGTATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATTTGCTCTCAGAACCTTATGTAGCTTTAGAAAAGAATCAGCTGGTGACCTGGGATATGGGACTTGGGATGCTGATTTCAGATAAAGCACTTTACTCTTCTCCAATAGCTTCTGGATTGAAATGTCTTCTTTGTGCATGCAACTAATTTATGATAAACATACCAATTTCTTTTTAAATGGCTATACTGCCCTCGTTCTGGCTGCACTTTAGGGCTTATAATGAGCTTTACTTTGAATTTCCATAGTAAACAGGAAAAAGAATGTTAGAGAAGGATCTGGGGAGGTGATTTGTTTAATGCAGGGCGCTTCGAGGGTTGCCCTATATGGGAATGGCAGAGAAGCACCGTGGCACACCAGTATGACCTGGCCTCGCTTGGATAGGACTTTTTCCGTATTTCTAAAGTACTTGCATGAGAATCTTAGAATCTGAATCAGATGCAGTTTTCTAATCAGCCCTTCTCATGTCCACCTGTGCATACCTCTGACTTGAAAAACAACTTGTCTAAGGTCTGTAGTTGACAGGCTGCCTGTAACTTACAAAGTTGTGTACATGTGTGGTTTTCTTTGGACTTCATAACTTTACTGAGTGAGTAGAAAGATCCAAGAGTTATAATCTCCAAGAGTTTGCTAACCTGCTCATAGGTACTGCTGTTGGGAGTGAGTACCTGCTTCTGTTTACCCCAGATCCTGAAGACCCTGCCCTTTATTTCTTACCACCAACAGACTTAACTTTTGCAACCAACACGAAATAAAACAAAAGTTCGTAAGCTTAAAAGTTTAACATGGTAAGCACAGCACGGCTGCAGAGCACCGAGTCTCCCTCCACGGTTCTCATTGCCTCTTGGCCTTTCCATTTATCCTTCCCTCACAGGGTGGAAGGTCATGAGAGAGGTCACTGGTTTCTGTGATTAAGGGGGGTAGGTAAATGAGTGACTTAATGTAGGACTCTTCACTTTTAATCGTCTTTGTTTATAACTTTTAAGACAAAAATTGAAGTTTGAAGGTAGTTTCAAATCCTGGAAGGTTTAAAATAATATAAAAATGGAAACTATTTTATTAAAATAAGTACTTTAAACTAACATTGAATAGTCTAGTTTCCGTTAACAGAAGGAAAATCTTGTGCATGCCTTCAGTCAGAAATCTGGAAACATGCTGGGCTTTGTGGCACTGTATACCCAGAACTCACTCGGGAGGCTGCAGTCCAAGGATCTTGAGTTGGAGACCAGCCTGAGCTACATAGCAAGCCCCTGTCTCTAAGAAAGAAATCTTGAAACAACAAAGATAGTAACATAAATCTTGACCTTTCAGAGAAATAAATAAGCTTTGGTTTTCTTATTATTACAAAGGTTTAATCAGAAGTTTATTGTGAAAACATTCCTGAGCTGGTTTTCACCCTGTAGTAGAGCAAGCCCTTTGACGAGGTGAGTGAGTGGGTGTCCACCCAAACGGCCGTTGTTCTCATCCCAGGGCCAATGGCATGGTAGGACTAGTCCCTCACACCCACCATCCCAGCACTCTTCTCACATTGTCTTCTGTCACAAGAATCACAAAGGAAGCCGACCCTTGGACATACCCATCACCAGTAACTGTCACAGTGCTCACCTGTGCCCCTCCTGCCTGGCAGGGTGAGCTTTTTAACAAGTAAGGTGCTGTTGTTGTGTTTCCATATGCATTCGAATAAAGGAGAATGTATTCAAGAGCATCACAGTTCCACCACTTTGATTGAGGAACGCAAGAATCACACTATGCTGTCACAGTACCAGTGGACCACGAGCTGGGTGCAGGTGGTGGTGTCCCCCTTGTGGGGACTTAGTGACTAGGTATTCCCTCTTTTCTTGGTGCTCTGATGTTTCCATAAGGCTGTAAAATGAGATGCTATGTTGACCAGAACAATCTTCCTAGAGGCTAATGCCAAAGTCCCATTTCCTCGTCTGTAAAGGGAAATAACATGGACACATGAGGGAATGGTGATGATTCAGTGGTTAACACAGAATGCCTGCCACCTGGGAGGCACTTAGCTGTCACGGGTAAGAAACGGTAGGAGGGCTGAGGACATCTAGAGAGAAGCACTGCCTCTGCAGTCTGCTGACCCTGCTGGACTCTAGGTCATCAGCTCTTGTGTGCTCTCAGGTAGAAAGCACACTGTGAACAACAGTCTATCTTTGTATAGTTGCTTGTGTGTTCTAAGGTTCAGAAGACTAGATCGCAAGTACTCACGCTCCACTATCTGACATGCTCAGAAAATACGTTAAATCAGCAGCATTTTATTTCATAACACAACTCAGTATGGCAGGTCTTTCTGCAGTAGTTATCCACATGTATCCTTGGCACAGTTATTTCTGATATGTGCCAGTAGTTTTGAGGTAGCACAGCTTACTAGATAAGCAGACCAAAATCTCATGTTGAGGCCTAACTAGTGGGAAGGATAGTGGAGTGCCTTGGGGTTGTTCGAGAACTCTGTCCTCAGGCTTGAGTTAGGATGCTGGTTAAGAGAGAGCAGCCTCTTACTAGAGCTGAGCTTAGGCCCTCCACTCCACTCCCATGACCCAAAAAGCAACGCTGAATTCAGAAGGACCCAAGTTTTCCACCATATTTTTGAGAACATTTTGATTCTTTAATAGTACTGATCATTTGAAAATATAAATGACTAGGCATACAACAACTATTATTCATTATTACTTGATTTTAAAGAGTACTAGATTTAGTATCTCATGGGCCAAAGTAGCTGAAACCCATAGTGCTTTGTTAAAGCTAAAGATGGCATCTGCAGTTGTCAGTCACCTAGGAGAGAAGATGGACGGTGGCAATAACAGTCTTTCTTTGATTGTATAAACGTCTGTGTTTGCCTTTCGGAACCTTTGTATGATGTGTATTGCTAATGTGATGTATAGCACATTTATTAAAAAGCTAATTGTAAATGTAAAGTTTGGGTTACTTTGGTGTTCCAAACAATAAAAAAAAGTACACAAAAAATGTGTTTGTGTTACCTCCTATCTGTCCTGTGTTACAAGGATCTCCAGAATATGTTTCAAGACACAAACTCTGCAGCTGGAATTGATTCTTTTTGTGGGACAGTAAAGCCTTCTCCTGACAGACATCACTTGTCCATTCCTGTCACACCCTCCCTGCCTTTGTTACGCAG
Seq C2 exon
CTGCAGATGGTGATGTTTATAAACGACCTCTCACTTCGAGAGTAATACTACACGTAAGATTACTTTTCTTTGCGATGTCCCGTGGTTTTGAAGCAGGACTCACATGGCGGCTGCTTAGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002104:ENSRNOT00000002881:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]