RnoINT0133851 @ rn6
Intron Retention
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196498353-196498626:-
Coord C1 exon
chr2:196498598-196498626
Coord A exon
chr2:196498483-196498597
Coord C2 exon
chr2:196498353-196498482
Length
115 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CATCTTTGATCTTCCCATAGAGT
3' ss Score
8.83
Exon sequences
Seq C1 exon
GACCCTGAGGACCGAAACAAGATGTCAGT
Seq A exon
GTAAGTTCTTGCTTTTTCATCCTTCTAAGTCTGCCTCCTTCTCTTAAGCCCACAAAAGAAGCCTAAGAAACAGCCAGTAGCAATCTGACCCTCTCCATCTTTGATCTTCCCATAG
Seq C2 exon
AGTTACTGAAGGCTCTCAGAATCATGGACACAATCCTCCCATGAAGTCTGAAGGGCTTCGCCGACCAGCTAGTAAAATTTCTATGCTCCAGAGCCAGCGAGTTGTGACTTCTACTCAGTCAAACCCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143:ENSRNOT00000028709:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(2.0=100)
A:
NA
C2:
PF0085623=SET=FE(9.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGAGGACCGAAACAAGA
R:
TCAGGGTTTGACTGAGTAGAAGT
Band lengths:
157-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]