RnoINT0137630 @ rn6
Intron Retention
Gene
ENSRNOG00000010451 | Slc34a3
Description
solute carrier family 34 member 3 [Source:RGD Symbol;Acc:708551]
Coordinates
chr3:2451021-2451457:-
Coord C1 exon
chr3:2451262-2451457
Coord A exon
chr3:2451111-2451261
Coord C2 exon
chr3:2451021-2451110
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GTGCCCTCTTTGTCTACCAGCTG
3' ss Score
8.3
Exon sequences
Seq C1 exon
GGCCTTCGGCGGCTCGGCCGTGCACGGCATCTTCAACTGGCTCACAGTGTTGGTACTGCTGCCACTGGAGAATGCCACTGCGGCACTAGAGAGACTGAGTGAGCTGGCCCTGGGTGCTGCTAGCCTGCAGCCAGGGGGGCAGGCCCCCGACATCCTCAAGGCACTGACTCGACCTTTCACACACCTCATCATCCAG
Seq A exon
GTGAGGACAGATGTGCCGGAGGAAGGTAACTGCATCTGGCTGACGAGCAGGAGGCAGGAGCCCTGTCCTGGATTGGGACAGAAGAGGGTTTAGCTTGTAACAGGCTGAGGGAGGAATACCAACGCCTAATTGTGCCCTCTTTGTCTACCAG
Seq C2 exon
CTGGATAGCAGTGTGGTTACCAGCAGCATTACCAGCAACACCACTAACAGCAGCCTGATTAAGCACTGGTGTGGCTTCAGGGGGGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010451:ENSRNOT00000014060:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(29.5=65.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCTTCAACTGGCTCACA
R:
CTGAAGCCACACCAGTGCTTA
Band lengths:
251-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]