RnoINT0140856 @ rn6
Intron Retention
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3813490-3814122:-
Coord C1 exon
chr3:3813858-3814122
Coord A exon
chr3:3813561-3813857
Coord C2 exon
chr3:3813490-3813560
Length
297 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
CATTTGCCCTTGTCCTCTAGCTG
3' ss Score
8.22
Exon sequences
Seq C1 exon
AGCCACACACTGGTGAAGGAAAGACGGAGGCAGCCACCTCTGCCTAATTCACGCTCAGGGTCTGACCCTGGTAACAGTATGGCTGGGCCCCATCTACGGCGGCTGTGGCATGGAACTTTCCAGAATAAGCAGAGACGCAAGAGACAGGCTCTACATCGAAGGCTCCTGAAGCACAGGCTCCTGCTGGCTGTGATACCCTGGGTGGGTGACATCAACCTGGCTTGCACACAAGCTGTCCAGAGACCTGCAGCTGTACAGACTCAAG
Seq A exon
GTACTACCTACCCTGGGCTCTTTGGGGAACTTATTGGAGCCGGGGTGGGAGCAGGCACCACTCCTTACTGATCCACAGCAGAGTAGGCTGATCGGGTCCTTTCAGGGGCATTCCTCAAAAGTGAGAGTGAACAGTGAAACAAGGGGCAGCCAGATTTGGGGTAATGGTAAGATTTGGGGCCCTACTCTACCCTTTGATGTAGTATGGAGCTTCTAAGGCAGCTCTGCCTTCCTCTGCCTTGGGGATCCTTTTCGAGGGGAGCTTCAAAACTGGTGTCCATTTGCCCTTGTCCTCTAG
Seq C2 exon
CTGACAGCATCAGGATGCAGCTGGAGTGTGCACGCCTGGCCAGCACTCCAGTGTTCACATTGTTTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845:ENSRNOT00000061682:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.584 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGGTGAAGGAAAGACGG
R:
GTGCACACTCCAGCTGCATC
Band lengths:
292-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]