RnoINT0140858 @ rn6
Intron Retention
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3812182-3813035:-
Coord C1 exon
chr3:3812925-3813035
Coord A exon
chr3:3812210-3812924
Coord C2 exon
chr3:3812182-3812209
Length
715 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTGACTCTTCTCTTTACAGGCG
3' ss Score
11.43
Exon sequences
Seq C1 exon
CTGTTGCAGATTGATACTGCGGGCTGCATGGAGGTGGTTCAAGAGAGGAAAACCCAGCCACCTGCACTGCTCCAGCCTGGCACCCGGAACACCCAGCCACATCTCCTGCAG
Seq A exon
GTAACATACAGAACAAGAAGTGAGGACAAATGGGGTACGGTGGCATACGCTTTTAATCCCAGGAGGCAGAAACAGGCAGATGTCTATGAGTTCAAAATCAACCTAGTCTACGTAGCAGGTTTTAAGCCAGCTGGGGCCACATGAGACCCTGACTCAAAAAAGAAGTAAGAACAAGAACGGCCCATCCCTGTCCCAGAGTGGTCCAGGTTCAGTGTCACAGTCCTTCCTTGGAGGGGCAGTTCCTAGACATTTCCATAGAACAGTGTTGCCTCCCTGAGAACAGCCTCTGCCATATCATCTCAGGGAGTCCTATCTGTGTGAGCAGCCCCATGGGCGACCTGATTAGAGCCTGAGGCAGGTACCAGGTAGGCTGTGGGTGGGCAGGTGGGCTGGCTGACACAAGCCCTGGTCAGTCTCTGTAGGTCACTAATACCATCTAGTCTAGGAACCAAACTCATGAGCTTAGTCTGGGCAGACAGTGAACCAAAACAGAACTCTGGTTCGCATAGCCCAGAGTCCCCACACTGTCCCACGGTAACCTGATGAGCTATGGTCAGGCAGCTTTTAGTGGCACTGTGTGGAAGGCCTACGGCAGCAGCTGTCCTTTCCCAGGCCCCCCAAGCTCAGTGCAGATGGAGCCCCAGAGTTGGGTGCTGAGTGGGAAGAAGTGCTGGGGTCCAGCAGAGATCCTGCAGTCTGACTCTTCTCTTTACAG
Seq C2 exon
GCGTCCTCTAATGCCAAGAACAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845:ENSRNOT00000061682:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]