RnoINT0140863 @ rn6
Intron Retention
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3822273-3822711:-
Coord C1 exon
chr3:3822544-3822711
Coord A exon
chr3:3822399-3822543
Coord C2 exon
chr3:3822273-3822398
Length
145 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGGCCTTGCTTTTGTCCCAGGAG
3' ss Score
7.69
Exon sequences
Seq C1 exon
GAAGAAGAAAGGTCAAGCGAGGGCAGCAATGATGACGAGGACCCCAAGGACAAAGCTCTTCCTGAAGACCCCGAGACCTGTCTGCAGCTAAATATGGTCTACCAGGAGGTGATCCGGGAAAAGCTAGCAGAGGTTAGCCAGTTGCTAGCCCAGAACCAGGAGCAGCAG
Seq A exon
GTGAGATGGCCTACTCAGCCCCTGTGTAACCCTCCTGGCCCTCAGTGCCCCACAGGGTCAAGTCCCCAGAGCAGGGCTCAGTGAATCTGGTACCAGCTGCTCTCCTTCTCTACCTGGCCCACCGATGGCCTTGCTTTTGTCCCAG
Seq C2 exon
GAGGAGATCCTGTTTGATTTGGCTGGGACCAAGTGCCCCAAAGTGAAGGACGCCAAAAGCCTGCCCTCATACATGTACATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAGGTCACTGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845:ENSRNOT00000061682:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.048
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAATGATGACGAGGACCC
R:
GTATGGCTTCAGGAAGTGGCC
Band lengths:
247-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]