RnoINT0140864 @ rn6
Intron Retention
Gene
ENSRNOG00000018845 | Snapc4
Description
small nuclear RNA activating complex, polypeptide 4 [Source:RGD Symbol;Acc:1309048]
Coordinates
chr3:3821714-3822398:-
Coord C1 exon
chr3:3822273-3822398
Coord A exon
chr3:3821793-3822272
Coord C2 exon
chr3:3821714-3821792
Length
480 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
AACACTGTACACTCTGACAGGGG
3' ss Score
5.05
Exon sequences
Seq C1 exon
GAGGAGATCCTGTTTGATTTGGCTGGGACCAAGTGCCCCAAAGTGAAGGACGCCAAAAGCCTGCCCTCATACATGTACATAGGCCACTTCCTGAAGCCATACTTCAAGGACAAGGTCACTGGAGTG
Seq A exon
GTGAGTAGTGACGAGCCTTCTCAGCCACTGTCTGAGTGTCCTGGGGGCAAGGGCTCTCTTCTCCACGGCCTGCTGTTAGCACTGGTATGTTCCCTCAGGTCTATGGGGTTAACATGCTCCCTCTTCCTGAAAACTGCTTCATCCTTTGATGAGAATCAAGGCTTCCAACTGGACATTGCCCCCTGGGGTGTGTTTCCCTAAAAGAATCACAACATTTAGCAAGTCAGTAGTATAGATCTCAAACTGCTGATGGCCTTGGATGCCTGCATCTTCCTGGAGTCTCTGGCCACTTTCTTCTCCTGGGTGGGTCATGTCCAGAGTTTTTCACTCAGTAGTAGGTTCTCATACAGAGGTCTTGGGCCTGGCCCTACATGTGGGCAGCACATGAGGCGGCTAGAGAGAAGATTCTGAGTTTCTGTGGGTACCCTGGAGGGTGAGTGTGGTTGGTGTGTCATGTTATAACACTGTACACTCTGACAG
Seq C2 exon
GGGCCTCCTGCCAACGAAGAAACTCGGGAGAAGGCTGCCCAGGGAATCAAGGCCTTTGAACAGCTCTTGGTGACTAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018845:ENSRNOT00000061682:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGATCCTGTTTGATTTGGCT
R:
TCACCAAGAGCTGTTCAAAGGC
Band lengths:
198-678
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]