RnoINT0159297 @ rn6
Intron Retention
Gene
ENSRNOG00000014529 | Ube2q2
Description
ubiquitin-conjugating enzyme E2Q family member 2 [Source:MGI Symbol;Acc:MGI:2388672]
Coordinates
chr8:59750384-59753464:+
Coord C1 exon
chr8:59750384-59750442
Coord A exon
chr8:59750443-59753419
Coord C2 exon
chr8:59753420-59753464
Length
2977 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
CTTGCTTTCCTTTTTTAAAGGTA
3' ss Score
10.8
Exon sequences
Seq C1 exon
GATAATTTCCCATTTGATCCCCCGTTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGG
Seq A exon
GTAAGTTTACATATTCACTTTTTTGTGATAGTATGTGTCAGAGTGATTCTGTGTCAGGTAGGTTAAAGGGACTTGAGAACATACATTTCTAAGTAGTTCTCAAATGAAACTGAGAGCACTTCCTTGGGGTCCACATTCAGAACCACAGGCCGAATTAGTTACTTATAAGTACACATCCTAATGGAGTTTATTTATAGGTATTGACCCTCTAGAAGCAGGTTTTAGCTGAGTGTACCTGCCTGTAATCTCAGTCTGTCAAAAGCTGATGCAGGATTGTGAGTTCCAGGCCAGCCTTGGCTATGCAGTAGGTCTGAGCCTGCCAGAGAGACCCATCCATGTCTATATCTGGATATTAGGTAATATGGTCAATGTATATCAAGATCCGGTCTTTAAAAAATGTTTTCCAAATATAAAGGATGCTTGAAGATTTCAGGAATGTTACAGTTACTGAGCTTCTCACAGGTGCTGAGTGTAGTCACAATGGTGATTTGGCAACCTGAGGCGACTGTGGAAGTGATCTCGGCATGAATAGTTATTACTTAATACAGTTGACTGGCGATTGTCGTACAGCTGTCCTGAATTTGTCTTCCTTCTTTTTGTAGTTAGGAAGCTATGGGAGGCAAGAAAAAGATCAACTCTGAAATGTTATGCAGTCCCCCATCAGACATCATTGAACTACTTGTAAGGAAGCAGGGAAGGTTAGAGTAGTTGTTTCTCTTGCAAAGGACCCAAAGTCAGTTTCTAGCACCCATGTGAAGTGACTTACAGCTACCTGCTACTTCAACTCCAGTGGATTTAATACCCCCTTCTGGCCTCTATAGGCATTTTGCACACACATGAATGAAAAGAAAAACAGTCTTGAAAAAAATCGTTTGAGAGTTTTTAAATCCTCAGCTAATTCTACTTTGTGAGATAATTTCTATTGTAATAATAAAATCTAAAAACATTGCCTATAAGCTGATAATTTTTGTATTTGAGACAATAGTGAATGGCTCCTAAAGATAGACTTCAGATCTTCTCAGAAATAGTCTCTTGTAATATATAGATGTGCAAAAACAAATGGAATTTTTTTGTTCCTGAGATCACATCCTGGTAAGATTTCTCAATATAGTCAGAATATGTGTGACCTGATGTTGGGGTGTAGAATCCGACACGACTGGCCATTGGGTCTGTGAGGCTCAGCATGTCTACAATACAGTCCAGGAACACTTCTTTAAAAGGTGACTTAGGTGCTGCCTGCAGCCTGCTCCTTTGGTGACATCTCCCAGAAAGTCCTGTGGTATATTAGATATTTTGAACGTAGGCTCAGTCATATTTATTCCAAAGGGACTTGTTGAAGACTTGATGTGATTTTTCCAAAAACTCAGTAAATAACAGCTCCTAAATCTGTTTTCCACAAAATCACTGGATAACTTCTAATATTAATATATATATTTGGCCCCTTGGCATCTCAGAAGATGGCGTCCTCTGGTTTGCTGTTTGGGAAATGTTACTCTTTGAGACACTGCAGTTCTGAGTGATGCTCAGCTGAAGTAATTCCATAGAAATGTAGCTGCTGCTTTTGGCAAACTGTTACAGTGCTGACCACAGTCCTAACAGTGAGATACTGTTAGGATGAGTGGAGATCACAAGCTAGGAGGGCTAAAGTTTCACTTTGTTACCTTTAAATACTTCTGCATGCTTCTGGATCAGGCAGTGGGGATGGTTTTTCTACCATAAAGCCCCATGGCTATTTTTGTAAGGAGAGCATTAGGTAACCTAGCCAAATATTTACATACACAAAATAAACATAAGGTGGAAATATGGTGAATTTTAAAACTTTTGTATCTCTCAGAACACCAGCCCTTTCCTAGCCAAGTATAGCAATGTTAAACTTTTTTACAGTTTAGTGTTGCTATAGCATTGTAAATTCTGTAACAAGTCTTTTTTTCCCCCTCCTTCCTCTGGTAAGCATATTTAACTGTGAATATTGGATTTGTCTGTCATTAACTGGTATATAGGAAAAAGGAAATAATTTCCTAGGAACAGAAGAGATGGCTTAGTTGGTAAAATGTTTGATGAGAAATTAGGACCTGAGTTGAGATACTAGAGCCCACATACAGTCTGGATATGATGGCTTATTCCTGTAACCCAAGCACTTGTGGGGAGAGGGAGGACAGGGAAAGGAGAAGAATCCTTGAAGCTGGCTGGAATTGGTGAGAGGTTCATTGAGAGACCCTATCTTAAACAGTATGGGGATAGCTGGAGTTAGGCCTAACCTCCATAGTGTGTGTAACACACACACCCCAACCACACACAAAAGAGAGGAGAAGCACCTAGAGCGATGGGTCCGATCTAAAGACTATAGCTGAGCTCCCATCGCCATGGGGTTAAGTGACAGAAGACCTGATGAAAAGAGGAGTGAGGTAGGGAAGCCTAGTAAAGGAGAACCAAAGTGGCTTCTTTCATAGCTCAGCTACTAAAAGAAGAAAAACTACTAGCTGATCAAAACCAACAATCTCAGAATTAGAAGACAACTTAAATTTTGTATGAAGGTATAGAAATGGAGGCATGGTAGGGCGTGTGTGGGCTCTACTGTGCCGTCTCAACAAAACACTGAAGACTCAGACTGTACAGCTGTCTGTAACCCTGTCAGCAGAGTTGTCAGCATTGCAACAGGGTGCAGAGAAAACTCCAGAGACTGAAGAACATGAGTGTCCACTAAGAAAACAGATTGTTTTGCTCCTGTTTTCTGGGATGTATGGAGCGAAGGTTTTAGTTTTTGATATCAGAAAAGTTTATTAGAATTCTGTTCAACTTGTTTGACAAGTCAATGGTATTAAGAGTAAGGACTGTAAACATTTGAAATTGGCCAGTCTTCTGTCTCTAACAACAGTTTCTATTTCTGGATGCTGTCTTCTACTTTTGTGTGAATACTGTCTTAGTAATGATTCAGAAGTTAAGGAAGATTCTCTATGCTTGCTTTCCTTTTTTAAAG
Seq C2 exon
GTACGTGTTGGGCGGGGCCACTGTTTTTCCTGTCACTATGGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014529:ENSRNOT00000019539:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(12.3=100)
A:
NA
C2:
PF0017921=UQ_con=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]