DreINT0170682 @ danRer10
Intron Retention
Gene
ENSDARG00000100766 | ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:ZFIN;Acc:ZDB-GENE-050522-329]
Coordinates
chr18:50606281-50607487:-
Coord C1 exon
chr18:50607429-50607487
Coord A exon
chr18:50606330-50607428
Coord C2 exon
chr18:50606281-50606329
Length
1099 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GTGGTGGTTGTTGTTGTCAGGTA
3' ss Score
6.01
Exon sequences
Seq C1 exon
GATAATTTCCCCTTCGATCCTCCATTTGTACGTGTAGTGTCTCCTGTTCTGTCTGGAGG
Seq A exon
GTAAGATTTATATGACTCTTACTAACGTCCTTATTTGCATGTAGAAGAATACATTTATTATTATCATTTATTATTATTATTATTGTTGTTTTTATTATTTATTATTTTGTTATTATTATTTATTATTTTGTTATTATTATTATTTATTTTCATTGATATTATTATTTATTTTTTGTTATTATTATTATTATTATTATTATTATTTATTTTTGTTGTTGTTGTTATTATTTATTATTTTGTTATTATTATTTATTTTTGTTGTTGTTGTTATTATTTATTATTTTGTTATTATTATTATTTATTTTTGTTGTTGTTGTTATTATTTATTATTTTGTTATTATTATTTATTTTTGTTGTTGTTGTTATTATTTATTATTTTGTTATTATTATTATTTATTTTTGTTGTTATTATTATTTATTATTTTGTTATTATTATTATTTATTTTTGTTGTTGTTGTTATTATTTATTATTTTGTTATTATTATTATTTATTTTTGTTGTTATTATTATTTATTATTTTGTTATTATTATTATTTATTTTTGTTGTTGTTGTTATTATTTATTATTTTGTTATTATTATTTATTTTTGTTGTTGTTATTATTATTTATTATTTTGTTATTATTATTATTTATTTTTGTTGTTATTATTTATTATTTTGTTATTATTATTAATATTATTTATTTTTGTTGTTATTATTATTTTTGTTTATTCTTTATTATTTTGTTGTTGTTATTATTATTATTATTATTGTTTATTATTATTATTATTATTATTATTATTATTATTATTAATCACTATTATTCAGTCCCTTCAGGATTTTGTGAGGAAAAAAACGTAGCTAAAATGATTGATTATACGGAGAGTTTGTGCAAAACGTCTTTTTTTATTGTTTTGCTGTGAAAATATACACGTTTACATGCCTCAATTATTATAATTTTATCTTTTGACCTAGAGAATTATTGATTCCAGTAATTTATATAAAGGAAACGCTAAGAGAAACTAGAATTTACCCATTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGTGTGTTGTGTCTGGAATGTTCTAAACTGGTGGTGGTTGTTGTTGTCAG
Seq C2 exon
GTATGTACTGGGAGGAGGAGCTCTGTGTATGGAACTACTCACTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100766:ENSDART00000159481:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(18.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]