HsaINT0176417 @ hg19
Intron Retention
Gene
ENSG00000160714 | UBE2Q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:HGNC Symbol;Acc:15698]
Coordinates
chr1:154524247-154524455:-
Coord C1 exon
chr1:154524397-154524455
Coord A exon
chr1:154524296-154524396
Coord C2 exon
chr1:154524247-154524295
Length
101 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GACTAACCTTTCTCATGCAGGTA
3' ss Score
9.03
Exon sequences
Seq C1 exon
GATAACTTTCCCTTTGACCCACCATTTGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGG
Seq A exon
GTGAGTGGCTGGCATGCGGAAGAGGGCATCTCCTCTGGCAGAGGGCGGGGAAGAGACTTGGAGATTTTGTCAGGCACAGCTGACTAACCTTTCTCATGCAG
Seq C2 exon
GTATGTTCTGGGCGGAGGGGCCATCTGCATGGAACTTCTCACCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160714-UBE2Q1:NM_017582:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(18.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACTTTCCCTTTGACCCACCA
R:
TGTTTGGTGAGAAGTTCCATGCA
Band lengths:
106-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)