MmuINT0169157 @ mm9
Intron Retention
Gene
ENSMUSG00000042572 | Ube2q1
Description
ubiquitin-conjugating enzyme E2Q (putative) 1 [Source:MGI Symbol;Acc:MGI:1917343]
Coordinates
chr3:89584811-89585017:+
Coord C1 exon
chr3:89584811-89584869
Coord A exon
chr3:89584870-89584968
Coord C2 exon
chr3:89584969-89585017
Length
99 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GACTAACCCCTCTTCTGCAGGTA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GATAACTTCCCCTTTGACCCACCGTTCGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGG
Seq A exon
GTGAGTGGCTGGGCAGAGGGAATAGGCCGTTCTGGTGCAGCAGGTGTGGAAGGGATTGGACCTCTGGCCAGGCACAGCTGACTAACCCCTCTTCTGCAG
Seq C2 exon
GTATGTTCTGGGTGGAGGTGCCATCTGCATGGAACTTCTCACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042572-Ube2q1:NM_027315:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(18.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTTCCCCTTTGACCCACC
R:
GCTTGGTGAGAAGTTCCATGC
Band lengths:
104-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: