MmuINT0169157 @ mm10
Intron Retention
Gene
ENSMUSG00000042572 | Ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:MGI Symbol;Acc:MGI:1917343]
Coordinates
chr3:89780889-89781095:+
Coord C1 exon
chr3:89780889-89780947
Coord A exon
chr3:89780948-89781046
Coord C2 exon
chr3:89781047-89781095
Length
99 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GACTAACCCCTCTTCTGCAGGTA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GATAACTTCCCCTTTGACCCACCGTTCGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGG
Seq A exon
GTGAGTGGCTGGGCAGAGGGAATAGGCCGTTCTGGTGCAGCAGGTGTGGAAGGGATTGGACCTCTGGCCAGGCACAGCTGACTAACCCCTCTTCTGCAG
Seq C2 exon
GTATGTTCTGGGTGGAGGTGCCATCTGCATGGAACTTCTCACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042572:ENSMUST00000038356:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(18.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTTCCCCTTTGACCCACC
R:
GCTTGGTGAGAAGTTCCATGC
Band lengths:
104-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types