BtaINT0156228 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007515 | UBE2Q1
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 1 (UBE2Q1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206320]
Coordinates
chr3:16086495-16086684:+
Coord C1 exon
chr3:16086495-16086553
Coord A exon
chr3:16086554-16086635
Coord C2 exon
chr3:16086636-16086684
Length
82 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
AACTAACCTTTCTTCTGCAGGTA
3' ss Score
9.92
Exon sequences
Seq C1 exon
GATAACTTTCCCTTTGACCCGCCGTTTGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGG
Seq A exon
GTGAGTGGCTCAGCAAGGGTAGAGGGTGAAGAAGGGCTGGGGAGCTTCTGCCAGGCACAGCTAACTAACCTTTCTTCTGCAG
Seq C2 exon
GTATGTTCTGGGCGGAGGTGCCATCTGCATGGAACTTCTCACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007515:ENSBTAT00000009889:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(18.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTTTCCCTTTGACCCGCC
R:
GCTTGGTGAGAAGTTCCATGC
Band lengths:
104-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]