RnoINT0159286 @ rn6
Intron Retention
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189113319-189113524:+
Coord C1 exon
chr2:189113319-189113377
Coord A exon
chr2:189113378-189113475
Coord C2 exon
chr2:189113476-189113524
Length
98 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
GACTAACCCTTCTTCTACAGGTA
3' ss Score
9.08
Exon sequences
Seq C1 exon
GATAACTTCCCCTTTGACCCACCGTTCGTCAGGGTTGTGTCTCCAGTCCTCTCTGGAGG
Seq A exon
GTGAGTGGCTGGGCAAAGGGAATAGCCATTGTGGTGCAGCAGGTGCGGAAGGGGCTGGGCCCGTGGCCGGGCACAGCTGACTAACCCTTCTTCTACAG
Seq C2 exon
GTATGTTCTGGGCGGAGGTGCCATCTGCATGGAGCTGCTCACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791:ENSRNOT00000028210:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=FE(18.8=100)
A:
NA
C2:
PF0017921=UQ_con=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACTTCCCCTTTGACCCACC
R:
CTTGGTGAGCAGCTCCATGC
Band lengths:
103-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]