RnoINT0168710 @ rn6
Intron Retention
Gene
ENSRNOG00000020356 | Zfp846
Description
zinc finger protein 846 [Source:RGD Symbol;Acc:1564241]
Coordinates
chr8:21614910-21617736:+
Coord C1 exon
chr8:21614910-21614992
Coord A exon
chr8:21614993-21616407
Coord C2 exon
chr8:21616408-21617736
Length
1415 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGA
5' ss Score
5.96
3' ss Seq
ACTCATCCCTTTATCAACAGGGC
3' ss Score
9.21
Exon sequences
Seq C1 exon
AATGGGAAATGCCACTTGGCACCCAAGAGTCAACATTGCATCAGGATTTTTTGAGGGGACAGACTTCCAGTGGAGTACAAACA
Seq A exon
GTAAGACTGACCAGAGACACTTGTCATTTCCCTCACTCACAGAAACTTATGAATTCCATTGTAGGAAAGCAAATGGCACACAGGAGGGATAAGCAGTGTACCTGAGAAGTGTTTTGAATATAATAAATTTTGAGGTGTCCCAAACCTATCACAAAACCTGTTCTTTAAGAGATTCTTCTGCCCAGATGTCTTGGTGGGTAAAGACTCTTGATGCAAGGCCTGACAGCATGAGTTTGGCCCACAGTAGCCACACTGTAGAAGAGAGAGCTGACTGACCGGCTATTCTCTGACCTCTACACGCACACTCCCCTCCCAAGTAAATAAATGCAATCTTATTCGTGTATTGTATTTATTTGAGACAGGGTCTTACTTAAGTAGCCTTGGCTGGCCCAGTACTTGTTATCTAAATCAGAAAGACATCTAACTCAGTGAGTTCTGCCTACCTCACTCAGCATAAATTTTTTAAGAAAGGATATCACAAGTACATGGCCCCACCTATGTAACTAGATACTAGCTTTTACGGCAGTTTTGGATATATCTTAGTGATTCTTTGGAGCTTAGATCAAATAGCAACTACTATTACATCATTCAGTTTGAAAGAAAACATGGCAGAAAATCTAAACACACTACAAAAAAGTTAAACATACTTTATCATTCGTTCATTCATCAGCAGGAGAGAAAGAATAGTCTTAATAAATTATGAGATTACCCAGGAGATTTCTTATTTACTACACTCAGGAAAGGTTGGGAATTTTGTAGACAAATCAATATAAATGATAAATACATAAGAGAAGTAATATATACCTAACTAAGAGAAATGTCTTAAGAGTCTAGGTCAAACCTTGGGGTGATAAAGCCCTCCTGAGTACACATTCCTGCATAAATCACTGGTTTCTGAGATTCTTAAAATAATTTCATTAAAATACTGAAGCAAGCCCAGGTATGGTAGTGCATGCCTTTAATCCAGGCACTTGGGATGTATAACATACATACATACATACATACATACATACATACATACACACACACACACACACACACACACACACACACACACACACACACACACATGCACGCGGATAGATAGGAGGCTGAGGCAAGGGGCCAGGATTGGTGGCACACACCTTTATCCCAGCATACAGATTACAGGTGGATCTCTAGATTTGAAGCCAGCCTTCTCTACATAGAGCTTCAGACCAGCCATAGCTGCATAGTAAAACCCTTTTCAAAAACTAAAAAAAACTACTAAAATACTGAGACATCTTTCCAAGATTAGAACTCATGGTTCTGGACTTTAAAGAAGGAGTCTTGCATGTAGTCAAAATGGCAAAAATCGTTTTTGTGCCCTCACATAAGTGGAATCCTTTAATAAGTCTGAAAAACTGTCTAACCCCGACTCATCCCTTTATCAACAG
Seq C2 exon
GGCAGAAGCCACAGTGCACGAGAACTCTGTTACTATACACAATGTGGAGAAATTTTCAGTGAACACTCATATTTCAAGACACATGTGAAAACTCACAGTGCGTGGAACACCGGCCATCTCACCCACTCAGATCATGATGCCTCTGCTCAAGTACACACCATAAAAACGTACCCGTGTAAGATTTGTGGAAAAGCCTTTGGACGGTCTTCAAATCTCAACAGACACCTGCGAAGCCACACTGGAGAGAAACCCTATGAATGTAAGGAGTGTGGGAAAGCCTTCACTACCTACTCAAGGCTAGTGGAACACTTTAGAACTCACACTGGAGAGAAACCGTATAAATGCAAGGATTGTGGGAAAGCCTTTGCTAAGCGGTCAGGCCTTATAACACATATATCAACCCATGCTTCAGAGAAACCCTTTGCATGTAAAGAGTGTGGGAAAGCCTTTGCTTCATCCCCACGCCTTAGTCAGCATATAAGAATTCACAGTGGGGAGAGACCCTACATATGTAAGGAATGTGGGCGAGCCTTCCTCACTTCCTCATACCTGCGGAACCATGTAGGAAGAACTCACAGTGGAGAGAGACCCTATATATGTGGAGAATGTGGAAAAGCCTTCCATTCTTACTCAAATCTACGTAGACATGTAAGAACTCACAGTGGAGAAAGACCCTATATATGCAAGGAATGTGGAAAGGCCTTCCTCAATTCCTCATACCTACATAACCATATAAGAAAGACGCACAGTGGAGAGATGCCCCATATATGTGGTGAATGCGGGAAAGTCTTCCATGCTTCCTCGTACCTGCGCAGACACTTAAGAACTCACAGTGGAGAGAGACCATGCATATGTAAGGAATGTGGAAAAGCCTTCCTCAACTCCTCCTACTTACGTAAGCATCTAACCATTCACACTGGAGACAAACCCTACGAGTGTAAGGACTGTGGGAAAGCCTACCGGAGGTACAATCTGCTACACGACCATTTAAAAACTCATGAGGTTGAAAAGCCATTTGAATGTGATGTATGTGGAAAATCCTTTCAGTATTTCTCATACCTTACTAAACACATTCGTATTCACACTGGAACAAAACCGTATAAGTGTAAGTACTGTGGGAAAGATTTCACTACTTCCTCAAGCCGAACTGAACATATCCGAACTCACACTGGCGAGAGGCCCTATGAGTGTATGGAATGTGAGAAAACCTTCACTTCTTCATCCAACCTCATTCACCACGTAAAAATTCACGCTAGAGAGAAACCTTTTGTTGAGACTGTAGGGAAGGAAGCCTACGATAGATTTTCCCTACTAACTGAACACCAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020356:ENSRNOT00000068461:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=6.1),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCCAAGAGTCAACATTGC
R:
GTGAAGGCTTTCCCACACTCC
Band lengths:
349-1764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]