RnoINT0169187 @ rn6
Intron Retention
Gene
ENSRNOG00000029220 | Zmym5
Description
zinc finger MYM-type containing 5 [Source:RGD Symbol;Acc:1306353]
Coordinates
chr15:37048132-37050131:-
Coord C1 exon
chr15:37049846-37050131
Coord A exon
chr15:37048295-37049845
Coord C2 exon
chr15:37048132-37048294
Length
1551 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
3' ss Seq
CTTTCTCCTTTGCGTTTCAGAGA
3' ss Score
10.35
Exon sequences
Seq C1 exon
ATTCTTGTATCTCCCAGTCAGCATCATTTCCCCGTAACCAGAAACAACAAGGGGCGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGAATTTCCAGCCCTCAAACCAACATCTTACTAAACCTGCTAATAAAATTATTTGTGCAAACTGCAAAAATCCTTTACAGAAGGGGCAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGTTCAACCACCTGCCTTTCTTCTTTCTCTCATAAGCGCACTCGAAAGACACGCAGTGCAATGTGTAAAAA
Seq A exon
GTAAGCAGACGTCAACATTTCTCCATCTGGTTTATCACTCAGTATAAATGAATACCCTGGATATAGTTGTAAGCTAGACTTGTGGTAGATGTGTCAGATGTTTTCACATTGGTTGGGATTGGGCTATAGTGTAGTTTTAACAAAGAATGGATCTAGGTACAGAAGTACAGTACCCTCCTTTCAGTAGCTATGCTTGCCTTTTCCATTCTACGTCTTACATATTAGTTCTCCCAACCTACCAGTTCAGTCAGTGCCTTTTCCTTCTGAGCCGTCTCCAGAGGTCACTGCCAACCATTTTTAATATTTATGTGTATGGGCTGGAGAGTTGGCACAGTGTTTTAGAGTACCAGCTGTTTTTCTAGAGGACCTTGGTTTGATTCTCGGTATCCATGTTAACTGGAGTTAGCTCCAGTCCCTGGGAATCCACTGCCCTCTTCTAGCTCCTGTGGGCATTGCATCCTTGTGGTACACAGACATACACAGAGGTAAAATAACCGTACACATAAAATAAAAATAAAGAAAAAAAATTTAAGTTCTGTGTGTGTGTTTGACAAAACTCAGAGGCATTGCATCCCACTCCAGTTGGGAGTTAAGTTAAAAGGTCACCGGAGGGCGCTGGGGATTTAGCTCAGTGGGTAGCACTTACCTAAGGAAGGTTGCCAAGGCCTGGGTTCAGTCCCAGCTCCGAAAGAGAACCAAAAAAAAAAAAAGTCACTGAGCTGCCCCTTGATATAGGCTAGGTGTCAAACTTCAGGTCCTANNNNNNNNNNNNNNNNNNNNNNNNNGCATTGCATCCCACTCCAGTTGGGAAGTTAAAAGGTCAACCTGAGGGGGCTGGGGATTTAGCTCAGTGGGTAGCACTTACTAAAGGAAGGTGCCAAGGCCCTGGGGTTCAGTCCCCAGCTCCGAAAGAAACCAAAAAAAAAAAAAGTCAACGAGCTGCCCCTGATATAGGCTAGGTGTCAACTCAGGTCCTTATGAGGGTCAAGCACTATACCAGTAAACCATCATTGAGCACCACCAGTATCCGTTTTTTTCTCTTCCAGGTGTTTTATCTTTCTTTTTTTTTTTTTTTTTTTTTTTGGTTTCTCTTTTTTTTTTTTGGCCTGATGGGGAACCGAACCCAGGGGCTTGCGCTTGCTAGCAGGCGCGTTACCACTGAGCTAATCCCAACCCCCAGTGTTTTTCTTAAAGATTAACTTAATCTGTATGTGGTTTTGCCTGTGTCTCTGTAAGTGTACTCTGCAGACCTGGTGCCCTCAGAGACCAGAAGTTACTGGGTTCACTGGAGCTGGAATTTTGGACAGTTGTGAGCCACAAGTGTGGATGCCAAGAACTGAACCTGGGTCCTCTGCAAATAACAGCCAGCGCTCTTAACTGTTGAGTCCATAGTTCTAGTATTTTTAATCCTGGAATGCTAAGAAGCATTAATGTTCGAGAGTTTTCCTTTGAGTTTTATCCTGTATTATTTAGGAAGCAGTGTAGGTAAAGCTGAAAGTGGATTTTAAAGTACAGTGTTCTTCAGATGTTTCTTTCTCCTTTGCGTTTCAG
Seq C2 exon
AGATTCTCCTGTGAAACCCACAACTATTGTTCCTCCAGTGGAGTCAAGCAAGTCCTTACGAGAATTTCATAGTGCATCTCCATCTCCCTATGAAAACTGCCAGAGTCTTAGGAAAGAAGTTTTTACTAAGTCAAGATGTATAATCTGTAATAAATTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029220:ENSRNOT00000047731:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=NA C2=0.127
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=42.7)
A:
NA
C2:
PF064679=zf-FCS=PU(40.0=29.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAACAACAAGGGGCGGAT
R:
TGGCAGTTTTCATAGGGAGATGG
Band lengths:
350-1901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]