GgaINT0106888 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:178330992-178334840:-
Coord C1 exon
chr1:178334552-178334840
Coord A exon
chr1:178331158-178334551
Coord C2 exon
chr1:178330992-178331157
Length
3394 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
ATTTTTTTTTTGTCTTTCAGAGA
3' ss Score
11.44
Exon sequences
Seq C1 exon
ATTCTTGGATATCCCAGTCAGCTTCGTTCCCTAGGAATCAAAAGCAACCAGGTGTGGATTCTTTATCACCAGTAGCATCACTACCCAAGCAGATCTTCCAGCCTTCTACTCAGCAGCCACCGCCGTCTAAACAGGTTAAAGTTACATGTGCAAACTGCAAAAAGCCTTTGCAAAAGGGACAGACTGCTTATCAACGGAAAGGATCAGCTCATCTTTTTTGTTCTACTACCTGCCTCTCATCATTCTCACACAAACCCGCTCCAAAGAAACTTTGTGTCATGTGCAGAAA
Seq A exon
GTAAGGGATTTTTTTTTTTACTTTATGTTGTATTAGCATCTAAATCCAGTAATACTTGAGATTCTCATGCATTCGTGATAATTGTGTTAATGATATAAAATTTGGCTACACAGGTACTTTGTATACTGTTGGTTTAATGTCATTTGGAAATATTGAATTCGTTGTTTAAGCAAGAACAAAATAAAAAGTCAATTTGAGTTCAGAGTAGGGCAGGTTATTTCCGTGAAAAAGAAACAAAGACTAGAAAAAAAGAAACTAGGGATTTTGAGGATGGAGAAAAGGGGGGGTTGGTGGGGGAGGCAGGGAGGTGAAGGTTGTCTGAGTTATATCCTGTGACAGAATATATTCTTTAGATAAAAAATTCTACTGAAATGAGTAGACCTTTTGCACAGAAACCATTCATTTTGAAAATAGAAGCTACAAAGTTGAGAGATCTAAAAAAGTAGAAACTGGAAACAACTGGAAGAAATATTGGGAACCCTTTTACTGTTGACTGTGTGTGTGGAGGAGGAGAAGCTTCGGACTTGTCCCGTAGAGTATGTGCAACAGTGACAACTTTTCAAGTTATAACTTAAGAGGATAATAGAAGGGGTGACAAGCATACTTCAAAGTGGCTTATTCTGAATTATTTGGTAGGTTTGACTTGTAACTTTTCATTGTTTCCATAGCTCAGAATTGCCAAAGGGAAATCTTCCAAGATAGCAGTATCTGAAGGGGCCTATGGGAAAGCTGGGGAGGGACTTTATAAGGACATGTAGCTAAGGGTAATGGCTTTAAACTGGAAGAGGGTAGGTTTAGCCTACACGTTAGGAAGGAATTCTTTACTGTGAGGGTAGTGAGACACTGGAACAGGTTGTCCAGAGAAGTTGTGGCTTCCCCCTCTTTGGTGGCGTTCAAGGCCAGTCTGGATGGGGCTTTGAACAAACTGTTCTAGAGAGGTGTCCCTGCCTATAGCAGGGGGCTGGAACTAAATGACCCTTCCTACCCAAACCATTATATGTTTCTATGATTTTATTTTCCTAGTGGTGGGTGTACTGGGTGTACTATTTTATTCTGTTAGCATACTAGTCTGAGGTACTCATACTTTTCTATATCTTTTCCAGTAAAATCTCAGTCTGGTACATCCTGTTCTGACACTAATTGAATGATTAATTTCTACCAAACTACAGAAGACTTCTAGTAAAGACTGCCTTTGTTAATGTATGTTTTGGAGAAGGTGATTGTAGCTTAGTCACAGAATCGCGTATTTAAACTAATGGAAGCTTTATATTAATATGCAGTGAGGTGGATGAATGGCTTGTATTCATTCAGATCTATCTATTTTCATTTCTCATGAGACTCAGTATCAAAATATAGGAATTATTTATACCCTTTATTTTCAAACCTTGGTACACTGTAAATATCTCAGATTTAACATTTTAGCTCTTATAAAATAGATGTAAATGCTCCAGTTCTCTGAGCAGTTACCTCTACGGAGCTAATTAAGAGCACTGTACTCTTGCTGATGGTTCGTACACAGATTCCTTTTTTATGCACCTATTTCTTTTTGTATGGTAAATATTCCACCAACTGTATCATAGATAAGGCTGAGGAGTAATCTTTTTCTTTCTGACTGAAATCTCGAAAACTCATGGCCAAGTTAGTGTTCTCGTGAAAATTGTTCTTTGGTTATACTTACTAGTGCATCGTAAACAGCAACATGCAAATGTAAATGCTTTGTTTATAAATCATGGGAAAATAACTGATTCCTGGCTTCTTTGCGTTGTTCAAAATAGTTTGTGTAGTTGTTTGATTTCTAAAGAATGACTGTGAAGTCACATTTAGATGCTTCTTGAGGTGATGTCATTCTTCACTTTTCCAAGTGAAGAACTTTTCCAAGCTAGCAAACCTGGTATCTTTCAAGCCTGACCTTGAATATCTCCAGGAACTGTGAAACTACCACGTTGCTGGGCAATGTTTTTCATTGCTTCACTACCCTTATTGTAAAAAAAAAAAATTTAAATTAAAAAAAAGTATATATATACTTTTTCCTTGCATGCAGTTTATAACTCCATTAAATATAGATACTACTTTTTGACCTCAAACTCATCTACTTTGATGAGAATTAATAGTGTATAAATCCTTGTAGAATCCAGCTAGGAACTGTAGAATCCTCAGGGCAGGAGCTTTGGCTTTGTTTTGCAGACCAGAAGTGTATCGCTTCCTAACCTGAATCTCCTCTAGGTTGCTGAAAAGCAAACCAAAAGCTGCTGAGTTTCCTTCAGGAAGGCAGACTTGCAGGTGGTAATGCTGAGGGGATGGTACGAATTTATTTGCGTAAATCATAAAATAATTTGGGTTGGAAGTGACCTTGAATGCCCATTGTGTTCCAACTGCCTGCCATGGGCTGGATTGCTACCCATCAGCTGAGGCTTCCTGGGGCCCCATCCAATCTGGCCTCGAGTGCCTCAGGTTATGGGACATCCACAGCTTCTTTGGGCAGCTGTGCCGGTGTGTCACCGCTCTCTGATTAGATAATTTCTTCCTGATATCTGATTTAAATCTCTCCTCTTTAGTTTAAAGCCGTTTCCCCTTGTCCTGTCATTACAATTCCTGATAGAGTCCATTTCTAGCTTTCTTGGAGGCCTACTTTCAGAGGAGTCTGTCTAGGGAGGCATACAGCATTTTCCCCACTCATCCCAGTTTTAGAGCTCCCGTGTATGAATGGAGCGTGTCTTTTACAGCTCGTCATCACTTATGATACAGAGCCAAACTGAGCCAGGCTATGTCTTATTTTCTCTGCCTGGTAGCACCTTCTGTACATAGATAAAATATTTCTCTGGATTAGTGGGCACAGGAGAAGACATCTGTTTCTTCTCCTTACTTCTAATTTATAGAATGTGATAGTTTGGAATTAAGAGTGAAACTACCAGTGGGACAGCCTTACAAATCTGAGAGATCTTCATAGAAAGGCTGGCTGACAAATGTGGTGTTTGTTACATGTGCAGCACACAATGGAAGATCAGAGAAGTTCGAAATTAACTTTGGTGGGACGAGAGAAAAGGATTTGTGTTCTGTATTTCAGATTAATATTATTGATGGTTATTTGTTTGGTTTAATGCATTAAATAGCTGCAACTTTGTGGACAGCTGAACAAATAATTTGAAACTTTAGTGGTATTAACTGTTTTTGAAATTTCAAGTGAGAAGGCTTCTGGGCAAGCTTGTGGTAGGGTATTAATCATTTTAGTTAACAGAAGATACTATTTGTTCGGCATGTGACTAACAACTCTACACCCACAAAACTGGCTTGAAAGGATTAAAAGGAAGTATGAATGTTACAAGCTGCAAAGGGTGCTTGTTTGGACATATGTTTATATACGTACACTCTAGAGGATTTTTTTTTTGTCTTTCAG
Seq C2 exon
AGATATAACAACAATGAAAGGTACCATCGTTGCTCAAGTTGATTCAAGTGAGTCTTTCCAGGAGTTCTGCAGTACATCATGTTTATCCTTCTATGAAGATAAACAGAACCCTTCAAAAGGAGCTTTGAATAAGTCAAGATGCACTATCTGTGGTAAACTAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000043420:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=42.3),PF064679=zf-FCS=PU(28.9=13.4)
A:
NA
C2:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]