BtaINT0164737 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36429022-36430798:-
Coord C1 exon
chr12:36430513-36430798
Coord A exon
chr12:36429188-36430512
Coord C2 exon
chr12:36429022-36429187
Length
1325 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
TTGACTTTGCTGCTTTTCAGAGA
3' ss Score
8.54
Exon sequences
Seq C1 exon
ATTCTTGGATCTCCCAGTCAGCATCCTTTCCCCGTAATCAGAAACAGCCAGGGGTGGATTCTTTATCACCAGTGGCCTCGCTTCCTAAACAGATTTTCCAGCCTTCTGCCCAACAGCAACCCACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTCTGCAGAAGGGACAGACAGCTTATCAGCGAAAAGGATCAGCTCACCTCTTCTGTTCTACCACCTGCCTTTCTTCCTTCTCTCACAAGCCTGCTCCAAAGAAACTTTGTGTTATGTGTAAAAA
Seq A exon
GTAAGGTTTACCTTTCAGCATATTTCCATGTGGTTGAATATTGGTGATATAAAATTTGAGAAAAATTGTTTTAGAGGTGAATCACCGTGTTTTGAAAATGCATAAGCTAAGCCAGACTAAAATTTGTAGAACATTAGAGTGTTCTCTGTCAAGCTGAGGTGGTTTAGGAATAAAGAGCCTCCTACTTGGATGGGCTTTGGGGTTGATTTAGATCCTCGATCCCTGTAATTAATTTTATCTGTGATCTCCTTTGGACTTCTTGAGTTTGTAAAAAATACATACATGCTTATTTACATTACTAATTATAAGAATTTAGTTCTAGCCCGATAAAATTCTTACACAATTTATGTGTGACTAGTTTTGTATTAAAATAGGTCAAAATTTAGAGTACTTTCATGTTAAGATTGTTTAAAATTGGCAGAACTTTTGGTTATTGTATGCATTTATTTATGTTTGTCTTAAATTTTAGGTCATTTTTTAATACTTACCTTTTGATGACTCAGGTACCAATTTTTTGACAGCCTTGTAGTGAATCCTCTCCTGCTGTTTCTACGTCTGGCCTCACTAGTTAAAAATGAGATGAATATGGCATATTCTGTACAAGGTCAAGCAGGTGGATTTTCTGTACCATCTCTTGAGCAGCCCATGTTTGTGAAGATGTTTTAGATCTTAGAAATTTGAAAAGGGCTGAGTGCTCTGTGTAAGTTTAGTAAATTCAAATATTGGTGCAATTGTTATACATTTTTTGGTTGCTTTACAGTAATAGGCTTGCATGCAGTAGTGTAAGACCTGAAAATTCAGAATTAAAGGAAAATTTCTAAAGTCATCAATGTGGTTGTTTCTTAACATTTTTAATTGTAGTTGAGAGCTGTACAGAATGGTCAGTGGGGTTGTTCTGGGTTATGGGATATATTTAAATTCACTTTTGCTCTCTAAAAGGATGTTGTATTCCTGTGACCTAGATATCTCATGCTTTCTGCTTACCTGGAGAGGAAAATTGCATAGGTATCATAGTTTATACCTCAGTAAATTAGGCCTTGACATTAAACTCCACATTTATAACAAAAACTTTTCTTTTAAAGTGTTTCCAGTGTCTGAAAGCCTTGTTAAGGAGCTTGAAGATGAATTGAGTGGTGGCTGGGGTTTAATAGTACTGCTTCTCAAGCTTCTATGTTCATCATATTTTTATGAACCAAGAGTTTTTACATAGTAAAGGTGATGTAATGAATCTAAAAATGGTTCCAGTTTATGGAAGTTAAAAATGTCACTTACTTTTTTTGTATTTGATTTATTTTTAAGTGGAGCTTGACTTTGCTGCTTTTCAG
Seq C2 exon
AGATATAACTACAATGAAAGGAACCATTGTTGCTCAAGTGGACTCAAGTGAATCCTTCCAGGAGTTCTGTAGCACATCTTGTCTGTCTCTCTATGAAGACAAACAGAATCCTACTAAAGGAGCTCTGAATAAATCAAGATGTACAATTTGTGGTAAACTAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=42.7),PF064679=zf-FCS=PU(28.9=13.5)
A:
NA
C2:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCTCCCAGTCAGCATCCT
R:
TCCTGGAAGGATTCACTTGAGT
Band lengths:
343-1668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development