MmuINT0180475 @ mm10
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56911078-56913117:+
Coord C1 exon
chr14:56911078-56911360
Coord A exon
chr14:56911361-56912951
Coord C2 exon
chr14:56912952-56913117
Length
1591 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTGTACCTCTTGTTTTTCAGAGA
3' ss Score
9.92
Exon sequences
Seq C1 exon
ATTCTTGGATCTCCCAGTCAGCATCATTTCCTCGTAACCAGAAACAACAAGGGGTGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGATATTCCAGCCCTCGAACCAACAACCCACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTCTACAGAAGGGGCAGACAGCTTACCAACGCAAAGGATCAGCTCACCTCTTCTGTTCAACCACCTGCCTTTCTTCTTTCTCCCATAAGCCTGCTCCAAAGAAACTCTGTGTTATGTGTAAAAA
Seq A exon
GTAAGATTAACCTTTCACACAATTCCATGTCATTGAATATTGATCATAAAAGTTTTTAGAATTTTTTTTTTGGGTGATGAATTCATGTTTTAAAACAGTTAGCAACTTTGAATCTTTGCAGCCCAAGTCTAAGTTGGTTATAGATGGGGCTTCGTATTTGGTATGGTCAGGTCTGATTGTCTTAGGTGCTTGTAGTTATTTTGAATGTCATTTCCAATGGATCCCTTAAATTTGGAAAAATGTAAATATTTACACTGTTTTATATTTTTTTGTTTTTACAGTGTTAGGGAGCAAGTCTAGAGCCTCACCTCACAGAGGCACTCTACTACTAAATTCATTATTAAATATAAGAATGTAGCTTAATGCTAGACAGTTTTTTATATATATGTGTGTGTGTGTGTATATATATATATATATATATATATATACACATATATATATGAGATACAGAATGCATATATGGTTCATTCTGTATTATAATAAGCCACATTTTACGATATCTTTGGAATGTGGTTATTTTGAGTGGGTAAAGCTTTGGGTTTTGGGTATTTTTGTGTTGAATATTATCAAAGGCTTATAGTTTCATAACCCAGATATCTTTTTTTGTAGTCTTGGAACTACAGCTTCTGCCCTTTTTTGGGGGGGGGCTGTTTTCACAAGCAAATATAGATGAATATTCTGTACTCTCTTGGAGCAGCCTAAGTCTGAAGCTGGTTTTAGCCGTTCGACCTCTGGGAAGGAGTTAGTGCTTTATTCTTGTAGTAAATCTAAGCACAAAAACAATTGTTCTATAGTGTTTAGGTGGTTTTAAATACTGTAATAGAGAGTTTAGAAGTTTAGTTCTTTTAAAGAAATGTCAACACTATCATGATTATTTAGATTTTTGGGGGGGATGGGTTGGCTCTTATCTTAGAACTTTATATAAGTTATCCTGGCTGCAAACCTGTAGTAGCCCTATTACTTCTCCCAAGGGCTGGAATTACAGGTACATGACCCCCTTCTATTTATTTGTTTGCTCATTCATTCATCCATATATTCACACATTTATGTTAAAACATAATCTCATGTAATCTAGGTTGGCTGTATACTGAGACCTTGAACTCTGAGATCCTTTTAAGTATTAGGTTACTGGAAAAGTAAAACTATTTCTTTGATAATAGATTTTAATGTCTTTTCAAACCTCCACCTTCTGAGTGTTCAGATTATAGATATGAGCCACCATGCTTGGCAAGTGGTGCATTTAAGTAGACTATTTTGTGTAGTAATCTCGTTTACCTATTAATCAGTTGGGAAGGGGAATTGAACAGGCAGTGTCAGTTTAAATAAATAATTATTCTTTTATTCCATGTTGTTATAGAAATTTTATTTTAATGTTTCCAATATCTGAAAGCCATGTTAATGTATTTGAAGATAAATTAATTTTGACTTTTAATCTTTTCTGAGAGTTCATATTTTATACTAAAAGTGATTTCCTGGATCTAAAAATGGTGTTTGATTTCCATGATCTAATCTGTGGTTAAAATATCAGTTATAACCTTTATTTTTGGTTTCTTATGAAATGGAGCTTTAAGTTGTACCTCTTGTTTTTCAG
Seq C2 exon
AGATATAACTACAATGAAGGGAACCATTGTTGCTCAAGTGGACTCAAGTGAGTCCTTCCAAGAATTTTGTAGTACATCTTGTTTGTCTCTCTATGAGGACAAACAGAGTCCTGCTAAAGGAGCTCTAAATAAATCAAGATGCACAATCTGTGGCAAATTAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945:ENSMUST00000022511:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=43.2),PF064679=zf-FCS=PU(28.9=13.7)
A:
NA
C2:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCAGCCCTCGAACCAAC
R:
TGCCACAGATTGTGCATCTTGA
Band lengths:
345-1936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types