RnoINT0169120 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37179037-37181319:+
Coord C1 exon
chr15:37179037-37179319
Coord A exon
chr15:37179320-37181153
Coord C2 exon
chr15:37181154-37181319
Length
1834 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTGTACCTCTTGTTTTTCAGAGA
3' ss Score
9.92
Exon sequences
Seq C1 exon
ATTCTTGGATCTCCCAGTCAGCATCATTTCCTCGTAACCAGAAACAACAAGGAGTGGATTCTTTATCACCAGTGGCCTCACTTCCTAAACAGAATTTCCAGCCCTCAAACCAACAACCCACTAAACCAGTTAAAGTCACTTGTGCAAACTGCAAAAAACCTCTACAGAAGGGGCAGACAGCTTATCAACGAAAAGGATCAGCTCACCTCTTTTGTTCAACCACCTGCCTTTCTTCTTTCTCTCATAAACCTGCTCCAAAGAAACTCTGTGTTATGTGTAAAAA
Seq A exon
GTAAGATTCATCTTTCACACAATTCCATGTCATCGAATATTGATCATAAAAGTTTTTAGAGATTTTTTTTTGGTGATGAATTTATGTTCTAAAAATCGGTAAGCTGCTTTGAATCTTTGAAGTCCACGTTTAAGTGGCTTATGGATAGGGCTTCCTATTTGTAGGCGTGTCTAGGTCCTTGTAATTATTTTGACTGTCATCTCCAATGGATTCATTAAATTTGAAAAAATGTGATTATTTACAGTTTTATATTTTTTGTTTTTATAGCACCAGGCTAGTCTAGAGCCTCCCCTCAGAGACGCTCTACTACTAAATTCACTATTAAACATAAGAATATAGCTTAGTGTTAGACAGTTATGTCTTTATGTTTATAATACAGAATGTATATATGGCACATTTTCTATTGTAATAAGCCACGTTTTACAGTACCTTTGGAATGTGGTTTTCAGTGGATAAAGCTTTGGGTTTTTTGTTTTGAATATTATCAAAGGCTTATAGCTTCATGACTTGGGAATACAGTTTCTGCCCTTGTTTGGAACTGTTCTCACTGATTACAAACAAATACAGATGATATATAGGGTTAAATGAGATGAATTTTCTACTTTCTTGGAGCAGCCCAAGTCTGCAGCTGATTTTAGCCAATAGACCCCTGGGAAGGACTTAGTGCTTCATTTTTGTAGTAAATCTAAGCACAGAAACAGTTGTTCTATAGTGTTTAGATTGTTTTACAGTACCTTAAATACTGTAATAGAGAGTTTAGAAATGTAGTTATTTCAAAGAAGTGTCAATACTATTATTATTTAGATTTTTTTTGGGGGGGGGTTGGTTCTTTGAGAGTCACCTTGTTATGTAGTCCAGGCTATCTTAGAACTTTATGTAAGTCATTCTGGCTGCAAACTTGTGGCAGTCCCACTACCTCTCCCAAGTCCTGGGATTACAGGTTCATCCCCTCCCTTCTATTTATTTGTTTGCTCATTCACTCACTCACTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATTCATGTCCAAACATGATCTCATGCAATTTAGATTGGCTGTACACTGAAATCTTGAACTCTACGATCCTCTAAGTATTAGATTACTGGAAAAGTAAAACAATTTTTTTGATAATAGATTTCAATGTCTTTTTTTTTTTTTTTTTAAAGATTATTTTATTTATTATATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGGGGGCATCAAATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTCAATGTCTTTTTAAACCTCTACCTTCTAAGTATTCAGATTATAGGTATGAGCCACCATGCCTGGCAAGTGGTGCATCTAAGTAGATTATTTTATGTAGTTTCTCTTGATGTTAAATTCCATGATCTAGTCATCTCATGTGTACCTATTAATCAACCAAGGAGGGGAATTGAACAGGCATTGTCAATTTAAATAATTAGTCTTTTATTCCATGTTATTATAGAAATTTTACTTTAATGTTTCCAATAGCCAAAAGCCTTGTTAGTGTATTTGAAGATAAATTATGAGTGACAGGATCAAATATTTTGACTTTTAGTCTTTTTGTTCCTAAGAATTTATATTTTATACTAAAAGTGATTTTCTGGATCTAAAAATGGTATTTGGTTTCCATAATTCAATCTGTGGTTAAACTATCAGTTCTAGCCTTTACTTTTGGGTTCTTAAGAAATGGAACTTTAAGTTGTACCTCTTGTTTTTCAG
Seq C2 exon
AGATATAACTACAATGAAAGGAACCATTGTTGCTCAAGTGGACTCGAGTGAGTCCTTCCAAGAATTTTGTAGTACATCTTGTTTGTCTCTCTATGAGGACAAGCAGAGTCCTGCTAAAGGAGCTCTAAATAAATCAAGATGCACAATCTGTGGTAAATTGACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=43.2),PF064679=zf-FCS=PU(28.9=13.7)
A:
NA
C2:
PF064679=zf-FCS=PD(68.9=55.4),PF064679=zf-FCS=PU(40.0=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCTCCCAGTCAGCATCA
R:
TTCTTGGAAGGACTCACTCGAG
Band lengths:
342-2176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]