DreINT0181018 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21638503-21639149:-
Coord C1 exon
chr9:21638864-21639149
Coord A exon
chr9:21638669-21638863
Coord C2 exon
chr9:21638503-21638668
Length
195 bp
Sequences
Splice sites
5' ss Seq
GAAGTACGT
5' ss Score
7.46
3' ss Seq
TTGTTTCCTTTCTTTACCAGAGA
3' ss Score
9.45
Exon sequences
Seq C1 exon
ATTCATGGATCTCCCAATCGGCGTCTTTTCCACGTAATCAGAAGCAGCCTGGAGTGGACTCACCATCCCCTGCAGCTCCTCTACCCAAACCTCCCTGCCAGTCCTCAGGATCCCAGCAGCCACCGCGCACCATGAAAGTCACATGCGCCAACTGTAAGAAACCTTTGAAGAAAGGCCAGACTGCGTACCAGCGCAAAGGCTCATCCCACCTGTTCTGCTCAACAACCTGCCTGTCTGCCTTTTCCCATAAGCCCGCTCCCAAAAAGAGCTGCACCATGTGCAAGAA
Seq A exon
GTACGTCATTTTAATATGAGTTTGAGTGAGTGAGAGAGAGCGAGAGAGTGATCTGAAATTGCTAACCACAGGTTAAAATGATGCTTAGCTGCTCTTATCTTTACACACGGTCAGACTTTTATATATGTGCATTGTCTTGATTTGGTTTATAGCAATTAGAGTGTCATCCTAACATTTGTTTCCTTTCTTTACCAG
Seq C2 exon
AGACATAACCAATATGAAAGGAGGCACCATAGTGGCCCAGGTGGACTCCAGTGAATCATTTCAGGAGTTCTGTAGCACAGGCTGCCTGGCAGCTTATGAAAACAAACAAAATCCTCAGAAGAACCAGATTAAAACAAAGTGCACCGTCTGTGGAAAACTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.469 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=WD(100=42.7),PF064679=zf-FCS=PU(28.3=13.5)
A:
NA
C2:
PF064679=zf-FCS=PD(69.6=57.1),PF064679=zf-FCS=PU(40.0=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCCTCTACCCAAACCTCC
R:
GCCACTATGGTGCCTCCTTTC
Band lengths:
249-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]