BtaALTA0026110-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92844766-92846632:+
Coord C1 exon
chr9:92844766-92844942
Coord A exon
chr9:92846553-92846555
Coord C2 exon
chr9:92846556-92846632
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
TTTTTTTTTTCCCCACTTAGAAG
3' ss Score
7.92
Exon sequences
Seq C1 exon
CTTCAGCAGTTAATACAGACTTTACAGATACAGCAGCAGAAGCCTCAGCCCTCCATCCTGCAAGCCCTGGATGCTGGTCTTGTCGTCCAGCTGCAGGCTCTTACAGCACAGCTTACAGCAGCAGCTGCAGCAGCCAACACCCTTAATCCCCTAGAACAGGGGGTGTCTTTTAACAAG
Seq A exon
AAG
Seq C2 exon
TTGATGGATAGGTTTGATTTTGGAGAAGATTCTGAGCATAGTGAAGAACCCAAAAAGGAAATTCCAGCTTCTCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-11-9,11-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=NA C2=0.963
Domain overlap (PFAM):
C1:
PF100254=DUF2267=PU(2.1=5.1)
A:
NA
C2:
PF100254=DUF2267=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCAACACCCTTAATCCCC
R:
TGGGTTCTTCACTATGCTCAGA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development