GgaALTA0006990-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52236443-52242212:+
Coord C1 exon
chr3:52236443-52236619
Coord A exon
chr3:52242133-52242135
Coord C2 exon
chr3:52242136-52242212
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
CTTACTTTGTTTTCTCCTAGAAG
3' ss Score
8.34
Exon sequences
Seq C1 exon
CTTCAGCAGTTGATACAAACGCTGCAGATACAGCAGCAGAAACCTCAGCCTTCACTACTTCAAGCCCTGGATGCTGGTCTTGTCGTTCAGTTACAGGCCCTAACTGCACAACTTACAGCTGCAGCTGCTGCTGCCAATACACTTAATCCGTTGGAACAGAGTGTCTCTTTTAATAAG
Seq A exon
AAG
Seq C2 exon
CTGATGGACAGGTTTGACTTTGGGGAAGAATCTGAACAAAATGAAGAGCCTAAAAAGGAAACTCCCACTTCCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-9-13,9-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=NA C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCACAACTTACAGCTGCA
R:
CCCCAAAGTCAAACCTGTCCA
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]