DreALTA0023781-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48849497-48851181:+
Coord C1 exon
chr17:48849497-48849673
Coord A exon
chr17:48851102-48851104
Coord C2 exon
chr17:48851105-48851181
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GTCATTTGCTTGTGTTGCAGAAG
3' ss Score
7.82
Exon sequences
Seq C1 exon
TTGCAGCAGCTGGTTCAGAGCCTGCAGATGCAGCAGCAGAAGCCTCAGCCCTCTCTGCTGCAGGCGCTGGATGCTGGTTTGGTGGTGCAGCTTCAGGCTTTGACTGCACAACTCACTGCAGCTGCAACAGCCAACAAACTCAACCCACTGGAACAGAGAGTTTCCTCCTTCAACAAG
Seq A exon
AAG
Seq C2 exon
CTGCTGGGTCAGTTTGATTTCGGGAATGAGTCTGAACACAGCGAGGATTCGAAGAAAGATTCTGCGTCCTCTCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-4-7,4-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.254 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCAACAAACTCAACCCA
R:
TCCTCGCTGTGTTCAGACTCA
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]