MmuALTA0015879-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3167963-3169406:+
Coord C1 exon
chr17:3167963-3168139
Coord A exon
chr17:3169327-3169329
Coord C2 exon
chr17:3169330-3169406
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
CGCCTTTCTCCCTTCCTTAGAAG
3' ss Score
9.31
Exon sequences
Seq C1 exon
CTTCAGCAGCTAATACAAACCTTACAGATACAGCAGCAGAAGCCTCAGCCTTCTATCCTGCAGGCCTTGGATGCTGGTCTTGTGGTTCAGTTACAGGCACTCACTGCACAGCTCACAGCTGCAGCTGCTGCAGCCAACACACTTACGCCCTTGGATCAGGGAGTCTCTTTCAACAAG
Seq A exon
AAG
Seq C2 exon
TTGATGGATAGATTTGATTTTGGGGAAGATTCTGAGCATAGTGAAGAATCCAAAAAGGAAATGCCTACTCCTCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-15-17,15-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCAGCCAACACACTTA
R:
TCACTATGCTCAGAATCTTCCCCA
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: