MmuEX0041109 @ mm9
Exon Skipping
Gene
ENSMUSG00000046201 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:MGI Symbol;Acc:MGI:1925212]
Coordinates
chr17:3164147-3169406:+
Coord C1 exon
chr17:3164147-3164277
Coord A exon
chr17:3167963-3168139
Coord C2 exon
chr17:3169327-3169406
Length
177 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTTCCCTTCCAGCTT
3' ss Score
10.81
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAACACCCGTGACACCTGTTACTCCAGCCAATGTGGTCCAAGGCTTACCTGATCCATGGGTATCTCAGATAGCAAACACAGACACACTGGCAGCTGTTGCTCAGATCCTACAAAGTCCTCAAGGTCAACAG
Seq A exon
CTTCAGCAGCTAATACAAACCTTACAGATACAGCAGCAGAAGCCTCAGCCTTCTATCCTGCAGGCCTTGGATGCTGGTCTTGTGGTTCAGTTACAGGCACTCACTGCACAGCTCACAGCTGCAGCTGCTGCAGCCAACACACTTACGCCCTTGGATCAGGGAGTCTCTTTCAACAAG
Seq C2 exon
AAGTTGATGGATAGATTTGATTTTGGGGAAGATTCTGAGCATAGTGAAGAATCCAAAAAGGAAATGCCTACTCCTCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046201-'14-16,'14-15,15-16
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.203 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCCGTGACACCTGTTAC
R:
AGTTGAGGAGTAGGCATTTCCTT
Band lengths:
210-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: