HsaEX0052629 @ hg38
Exon Skipping
Gene
ENSG00000213079 | SCAF8
Description
SR-related CTD associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr6:154795009-154803623:+
Coord C1 exon
chr6:154795009-154795139
Coord A exon
chr6:154801971-154802147
Coord C2 exon
chr6:154803544-154803623
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATATATTTTTTTCTCTCCAGCTT
3' ss Score
8.62
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GAACTCCTGTGACACCTGTTACTCCGGCCAATGTGGTCCAAGGCTTACCTGATCCGTGGGTATCTCAGATAACAAATACAGATACACTTGCGGCTGTAGCTCAGATCTTGCAAAGTCCTCAAGGCCAGCAG
Seq A exon
CTTCAACAATTAATACAAACCTTACAGATACAACAACAGAAGCCCCAGCCTTCCATTCTGCAGGCCCTAGATGCTGGTCTTGTTGTTCAGTTGCAAGCTCTTACGGCACAACTTACAGCTGCAGCTGCAGCTGCCAACACTCTTACTCCCTTAGAACAGGGAGTCTCCTTTAACAAG
Seq C2 exon
AAGTTGATGGATAGGTTTGATTTTGGGGAAGACTCTGAGCATAGTGAAGAACCCAAAAAGGAAATTCCAGCTTCACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.174 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCTGTGACACCTGTTACT
R:
AGTTGTGAAGCTGGAATTTCCT
Band lengths:
210-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development