GgaEX1050988 @ galGal4
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr3:49612588-49621202:+
Coord C1 exon
chr3:49612588-49612718
Coord A exon
chr3:49615433-49615609
Coord C2 exon
chr3:49621126-49621202
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTTCTCTCTTTTAGCTT
3' ss Score
11.91
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GAACACCTGTGACTCCAGTTACTCCTGCCAATGTGGTGCAAAGTTTACCTGATCCTTGGGTGTCTCAGATTGCTAATACAGATACGCTTGCTGCTGTAGCCCAGATTTTACAGAGTCCCCAAGGCCAACAG
Seq A exon
CTTCAGCAGTTGATACAAACGCTGCAGATACAGCAGCAGAAACCTCAGCCTTCACTACTTCAAGCCCTGGATGCTGGTCTTGTCGTTCAGTTACAGGCCCTAACTGCACAACTTACAGCTGCAGCTGCTGCTGCCAATACACTTAATCCGTTGGAACAGAGTGTCTCTTTTAATAAG
Seq C2 exon
CTGATGGACAGGTTTGACTTTGGGGAAGAATCTGAACAAAATGAAGAGCCTAAAAAGGAAACTCCCACTTCCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635_MULTIEX1-3/13=1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.229 C2=0.926
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000022182fB2454
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACTCCAGTTACTCCTGC
R:
AGTTGGGAAGTGGGAGTTTCC
Band lengths:
202-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]