GgaEX1050988 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52233598-52242212:+
Coord C1 exon
chr3:52233598-52233728
Coord A exon
chr3:52236443-52236619
Coord C2 exon
chr3:52242133-52242212
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTTCTCTCTTTTAGCTT
3' ss Score
11.91
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GAACACCTGTGACTCCAGTTACTCCTGCCAATGTGGTGCAAAGTTTACCTGATCCTTGGGTGTCTCAGATTGCTAATACAGATACGCTTGCTGCTGTAGCCCAGATTTTACAGAGTCCCCAAGGCCAACAG
Seq A exon
CTTCAGCAGTTGATACAAACGCTGCAGATACAGCAGCAGAAACCTCAGCCTTCACTACTTCAAGCCCTGGATGCTGGTCTTGTCGTTCAGTTACAGGCCCTAACTGCACAACTTACAGCTGCAGCTGCTGCTGCCAATACACTTAATCCGTTGGAACAGAGTGTCTCTTTTAATAAG
Seq C2 exon
AAGCTGATGGACAGGTTTGACTTTGGGGAAGAATCTGAACAAAATGAAGAGCCTAAAAAGGAAACTCCCACTTCCCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'7-12,'7-10,9-12=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.288 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTGTGACTCCAGTTACT
R:
AGTTGGGAAGTGGGAGTTTCC
Band lengths:
210-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]