DreEX6056187 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48849291-48851181:+
Coord C1 exon
chr17:48849291-48849418
Coord A exon
chr17:48849497-48849673
Coord C2 exon
chr17:48851102-48851181
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTGTATGTCTGAATCTGTAGTTG
3' ss Score
5.09
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAACTCCTGCAACTCCAGCCACCCCTGCCAATATAGTGCAGAGTCTTCCAGACTGGGCGTCTCAGATCTCCAACACAGACACTGTGGCTGCAGTTGCCCAGATCTTGCAGAGTCCTCAGGGCCAGCAG
Seq A exon
TTGCAGCAGCTGGTTCAGAGCCTGCAGATGCAGCAGCAGAAGCCTCAGCCCTCTCTGCTGCAGGCGCTGGATGCTGGTTTGGTGGTGCAGCTTCAGGCTTTGACTGCACAACTCACTGCAGCTGCAACAGCCAACAAACTCAACCCACTGGAACAGAGAGTTTCCTCCTTCAACAAG
Seq C2 exon
AAGCTGCTGGGTCAGTTTGATTTCGGGAATGAGTCTGAACACAGCGAGGATTCGAAGAAAGATTCTGCGTCCTCTCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.254 C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCCTGCAACTCCAGCC
R:
AGAGGACGCAGAATCTTTCTTCG
Band lengths:
203-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]