BtaEX6050103 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92841771-92846632:+
Coord C1 exon
chr9:92841771-92841901
Coord A exon
chr9:92844766-92844942
Coord C2 exon
chr9:92846553-92846632
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTCCCCGCACCCCGCTGCAGCTT
3' ss Score
5.68
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
GAACTCCTGTGACACCTGTTACTCCAGCCAATGTGGTCCAAGGTTTACCTGATCCGTGGGTGTCTCAGATAACAAATACAGATACACTTGCAGCAGTAGCTCAGATCTTACAAAGTCCTCAAGGCCAACAG
Seq A exon
CTTCAGCAGTTAATACAGACTTTACAGATACAGCAGCAGAAGCCTCAGCCCTCCATCCTGCAAGCCCTGGATGCTGGTCTTGTCGTCCAGCTGCAGGCTCTTACAGCACAGCTTACAGCAGCAGCTGCAGCAGCCAACACCCTTAATCCCCTAGAACAGGGGGTGTCTTTTAACAAG
Seq C2 exon
AAGTTGATGGATAGGTTTGATTTTGGAGAAGATTCTGAGCATAGTGAAGAACCCAAAAAGGAAATTCCAGCTTCTCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'10-8,'10-7,11-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.220 C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
PF100254=DUF2267=PU(2.1=5.1)
C2:
PF100254=DUF2267=FE(18.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCTGTGACACCTGTTACT
R:
AGTTGAGAAGCTGGAATTTCCT
Band lengths:
210-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]