BtaEX0000197 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:77484306-77492392:-
Coord C1 exon
chr16:77492357-77492392
Coord A exon
chr16:77491582-77491642
Coord C2 exon
chr16:77484306-77485524
Length
61 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCTGATTTCTCGTAGTTA
3' ss Score
6.73
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
GTGCAGGATACATCGTGCTCGTCATTGTTGCTGTAC
Seq A exon
TTATTGGCGTTGGATTATTGCTCTGCCTGTACTGCTGTTTTTGCAGACAGAGGAAGAAAGG
Seq C2 exon
GAAAGCAGAATGTAGCGCTACGTACACCACTTATCAGGATAAAGCAACCACTGCAACAGAACAGATGAACTGAACCGTTTCCAGGAACGCATGTACCATTCAGCCATGAAAATGAAGGAAACCTTGCCATTTGCCACAATACAGACAGACCTGAGGGGACTTTGCTGGGTAATAAGTCATGTAAAGAAAGACGTGTACTGTCTGATCTCACTTACACATGGAATCGAAAAAAACAAGCTTTCACAGAAGAAAAATGAGATTTGTCGATGTCAGCGGTGGGGGACTGGTGGGGGTGGGTTTGAGTAAAGGTGGTCAGAAAATACAAACCTTCAGTTATAGGGTGAGAAAGTACTGGGGTATAATTACAGCACAGTGGCTACCATGAGTTACTCATACTGTATTTATGTTGGCAAGTTGCTAAGAGAGTGGATCTTAAAAAGTTCTAATCACATGGAAGAAAAAAGCTTTTTGTAGTATTGACATTATCAAATCATGCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397_MULTIEX1-11/13=10-C2
Average complexity
C1
Mappability confidence:
83%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
PF0248011=Herpes_gE=FE(14.8=100),PF041569=IncA=FE(20.0=100)
A:
PF0248011=Herpes_gE=FE(24.7=100),PF041569=IncA=FE(33.3=100)
C2:
PF0248011=Herpes_gE=PD(24.7=80.0),PF041569=IncA=PD(36.7=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGCTCGTCATTGTTGCT
R:
CCTTCATTTTCATGGCTGAATGGT
Band lengths:
143-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development