HsaEX6036481 @ hg38
Exon Skipping
Gene
ENSG00000117335 | CD46
Description
CD46 molecule [Source:HGNC Symbol;Acc:HGNC:6953]
Coordinates
chr1:207785071-207790345:+
Coord C1 exon
chr1:207785071-207785106
Coord A exon
chr1:207785619-207785682
Coord C2 exon
chr1:207790253-207790345
Length
64 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCTGGTTTCTTATAGTTG
3' ss Score
7.75
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
ATGTTTGGGTCATTGCTGTGATTGTTATTGCCATAG
Seq A exon
TTGTTGGAGTTGCAGTAATTTGTGTTGTCCCGTACAGATATCTTCAAAGGAGGAAGAAGAAAGG
Seq C2 exon
CACATACCTAACTGATGAGACCCACAGAGAAGTAAAATTTACTTCTCTCTGAGAAGGAGAGATGAGAGAAAGGTTTGCTTTTATCATTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117335-'39-32,'39-28,40-32
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTTGGGTCATTGCTGTGA
R:
AATGATAAAAGCAAACCTTTCTCTCA
Band lengths:
124-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains